Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.3e-256 887.5 449 100.0
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 7.1e-235 817.0 453 91.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.2e-234 816.2 453 90.7
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.1e-230 801.6 452 90.3
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.9e-229 797.3 452 90.0
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 8.5e-228 793.5 453 89.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.8e-225 785.8 453 88.3
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.8e-207 725.3 435 85.3
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.1e-206 723.4 453 81.5
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 5.3e-206 721.1 453 82.3
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 2.9e-204 715.3 457 80.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.5e-204 714.1 458 80.8
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 9.4e-203 710.3 454 81.1
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 2.1e-202 709.1 455 80.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 6.1e-202 707.6 452 81.4
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.4e-201 706.4 458 79.3
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.8e-201 703.7 465 78.7
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.2e-199 699.1 457 78.1
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 8.2e-199 697.2 471 76.4
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.8e-198 696.0 449 78.8
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 4.1e-198 694.9 401 85.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 7.0e-198 694.1 462 77.7
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 9.1e-198 693.7 449 78.6
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.0e-197 692.6 450 78.4
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.5e-197 691.4 450 80.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.9e-197 691.0 378 91.5
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 7.7e-197 690.6 453 77.9
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 7.7e-197 690.6 446 77.8
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.3e-196 689.9 389 86.1
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.7e-196 689.5 452 77.7
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 6.5e-196 687.6 453 77.9
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.5e-196 687.6 448 78.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 8.5e-196 687.2 453 77.9
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 1.9e-195 686.0 446 78.9
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.5e-195 685.6 455 77.4
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.5e-195 685.6 452 79.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 5.5e-195 684.5 451 80.0
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 5.5e-195 684.5 451 80.0
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 5.5e-195 684.5 423 81.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 9.4e-195 683.7 440 78.0
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 2.7e-194 682.2 449 78.0
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 3.6e-194 681.8 449 79.3
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 6.1e-194 681.0 455 78.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 8.0e-194 680.6 453 79.2
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.4e-193 679.9 449 77.7
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.8e-193 679.5 449 78.0
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.3e-193 679.1 440 77.3
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 3.0e-193 678.7 384 85.9
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 4.0e-193 678.3 448 78.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 4.0e-193 678.3 445 78.2
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 6.8e-193 677.6 447 77.2
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 8.8e-193 677.2 455 76.5
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 8.8e-193 677.2 453 78.1
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 8.8e-193 677.2 451 76.1
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.2e-192 676.8 384 86.7
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.5e-192 676.4 448 77.9
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.0e-192 676.0 378 87.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.0e-192 676.0 457 76.6
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 4.4e-192 674.9 452 76.5
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 5.7e-192 674.5 444 77.7
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 5.7e-192 674.5 424 80.4
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.5e-192 674.1 452 76.1
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 9.8e-192 673.7 444 77.7
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 9.8e-192 673.7 451 76.3
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.3e-191 673.3 387 85.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.7e-191 672.9 441 77.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 2.8e-191 672.2 450 77.8
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 4.8e-191 671.4 439 75.9
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 4.8e-191 671.4 405 82.5
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 8.3e-191 670.6 451 76.1
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.1e-190 670.2 449 77.3
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-190 669.8 449 76.4
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 1.4e-190 669.8 450 77.8
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.8e-190 669.5 396 84.3
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.8e-190 669.5 452 76.5
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.4e-190 667.9 452 76.3
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 5.4e-190 667.9 458 76.0
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 9.1e-190 667.2 417 79.1
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.2e-189 666.8 443 77.0
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 2.0e-189 666.0 447 77.0
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.0e-189 666.0 437 78.5
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.0e-189 666.0 465 74.2
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.0e-189 666.0 440 75.7
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.5e-189 665.2 458 76.4
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 5.9e-189 664.5 440 75.7
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.9e-188 662.1 446 76.5
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.9e-188 662.1 446 76.5
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.8e-188 661.8 462 75.8
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 8.6e-188 660.6 454 76.4
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 2.5e-187 659.1 389 84.1
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 5.5e-187 657.9 504 70.4
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.1e-186 656.0 446 76.2
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 4.7e-186 654.8 380 84.5
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 2.3e-185 652.5 439 74.9
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 3.0e-185 652.1 448 75.7
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 5.2e-185 651.4 446 75.8
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 3.5e-181 638.6 366 85.2
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.9e-181 637.9 384 81.2
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.6e-180 634.4 385 78.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.5e-179 632.5 385 78.2
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.6e-178 629.8 441 72.6
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 3.2e-174 615.5 458 72.5
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 5.6e-171 604.7 415 73.0
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.7e-170 601.7 328 90.2
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.8e-169 599.7 386 74.1
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.8e-169 599.7 364 78.3
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 4.0e-169 598.6 385 74.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.2e-159 566.2 449 68.6
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 3.7e-159 565.5 413 71.7
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.9e-156 555.4 372 73.7
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.1e-155 553.9 420 69.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 4.3e-155 552.0 419 66.1
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.5e-149 532.3 502 59.6
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.1e-148 528.5 287 90.2
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 5.1e-148 528.5 370 70.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 8.4e-143 511.1 339 79.1
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.3e-142 507.7 287 85.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.3e-140 503.8 364 66.2
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.2e-136 490.7 376 69.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 7.9e-133 478.0 340 74.7
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 9.0e-129 464.5 378 60.1
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-121 440.3 280 76.1
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 2.2e-119 433.3 233 91.4
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.1e-113 412.5 449 55.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.2e-111 406.8 314 66.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.1e-97 359.4 224 75.4
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.9e-86 323.9 256 66.4
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.0e-80 303.9 192 74.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.2e-77 294.7 273 59.7
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.6e-77 293.1 299 49.2
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.3e-71 274.6 246 59.3
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.9e-71 273.5 161 83.2
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.3e-68 263.8 355 43.7
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 5.9e-64 249.2 207 67.6
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 2.8e-53 213.8 342 41.2
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 8.3e-50 202.2 239 51.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.5e-46 190.7 184 60.3
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.2e-43 181.8 113 76.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 5.3e-28 129.8 77 79.2
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-26 124.8 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-26 124.8 83 69.9
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.6e-24 118.2 129 54.3
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.6e-24 118.2 129 54.3
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.3e-22 110.2 73 72.6
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 3.6e-21 107.1 113 52.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.4e-20 105.1 77 63.6
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.8e-18 97.1 69 66.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 3.2e-09 67.4 37 81.1
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.3e-07 61.2 111 40.5


User provided reference genes

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