Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 2.6e-165 585.5 335 100.0
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.5e-104 383.6 379 62.5
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.0e-101 373.2 375 65.3
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 2.3e-97 359.8 372 64.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.6e-80 303.1 363 56.5
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.8e-80 302.0 370 55.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-79 300.8 365 54.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.7e-79 299.3 366 55.7
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-78 297.0 350 56.0
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.7e-77 293.1 385 52.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.0e-77 292.0 350 55.7
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.3e-76 290.8 386 51.8
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.4e-73 280.8 377 53.1
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.4e-73 280.8 383 50.7
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 6.8e-73 278.5 388 50.0
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.9e-71 273.1 451 44.6
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.4e-70 270.8 379 50.4
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 2.4e-70 270.0 385 51.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.2e-70 269.6 386 51.0
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.4e-70 268.9 454 44.5
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 7.1e-70 268.5 382 51.3
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.0e-69 265.4 383 48.3
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 3.0e-68 263.1 391 50.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.1e-68 262.3 391 49.4
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 6.6e-68 261.9 399 47.9
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-67 261.2 327 53.5
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.3e-67 259.6 401 46.1
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 5.6e-67 258.8 387 49.4
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 7.3e-67 258.5 293 54.9
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.5e-67 258.1 384 47.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.6e-66 256.1 374 48.1
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.7e-66 255.8 339 53.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 6.2e-66 255.4 392 49.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 8.1e-66 255.0 371 50.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.1e-66 255.0 392 45.7
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.4e-65 254.2 383 47.3
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.9e-65 251.5 405 47.2
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.0e-64 250.4 366 49.5
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.0e-64 250.4 372 48.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.4e-64 249.2 374 47.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.4e-64 249.2 357 51.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 9.9e-64 248.1 377 47.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.3e-63 247.7 368 52.7
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.2e-63 246.9 391 47.1
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.2e-63 246.9 392 46.9
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 2.9e-63 246.5 365 50.1
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 4.9e-63 245.7 387 46.3
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.9e-62 243.8 385 47.3
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.4e-62 243.4 380 47.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-62 243.0 321 52.3
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.4e-62 242.3 384 47.1
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-61 241.1 382 48.2
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.2e-61 241.1 370 48.4
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.6e-61 240.7 379 45.1
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 1.6e-61 240.7 395 45.8
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.5e-61 239.6 383 47.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.6e-61 239.2 390 46.7
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.0e-60 238.0 321 51.7
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.7e-60 237.3 378 47.4
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 8.7e-60 235.0 391 45.3
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.9e-59 233.8 393 45.5
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.9e-59 233.8 378 46.0
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 5.6e-59 232.3 352 46.3
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.1e-58 230.3 384 45.8
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 3.6e-58 229.6 395 44.3
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 3.6e-58 229.6 388 44.6
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 4.7e-58 229.2 394 44.7
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 4.7e-58 229.2 386 43.5
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.1e-58 228.4 373 45.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 8.1e-58 228.4 382 46.9
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.8e-57 227.3 378 45.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.4e-57 226.9 392 44.9
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.2e-57 225.7 284 52.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 5.2e-57 225.7 392 44.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.4e-56 223.0 357 44.8
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.4e-56 223.0 385 44.9
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 4.4e-56 222.6 384 46.6
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 5.8e-56 222.2 364 47.5
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 2.9e-55 219.9 368 43.5
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.9e-55 219.9 355 45.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.9e-55 219.9 362 45.9
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.9e-55 219.9 383 44.9
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.8e-55 219.5 376 45.2
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 6.4e-55 218.8 382 42.9
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 6.4e-55 218.8 389 43.4
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 7.1e-54 215.3 377 45.1
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.7e-53 213.4 382 45.8
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.5e-53 213.0 371 43.9
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.0e-52 211.5 331 46.2
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.3e-52 211.1 350 45.1
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.7e-52 210.7 345 45.5
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.3e-51 206.5 334 47.0
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.3e-51 206.1 387 44.4
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.1e-50 203.8 353 43.1
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.8e-50 203.4 362 45.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.0e-49 199.5 365 42.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 9.0e-49 198.4 268 51.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.5e-48 197.6 354 42.9
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 5.8e-48 195.7 373 43.4
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 7.6e-48 195.3 368 41.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.7e-47 194.1 371 42.6
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.7e-47 194.1 383 43.3
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.9e-47 193.4 355 43.9
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 8.4e-47 191.8 323 43.3
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.9e-46 190.7 347 43.5
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.2e-46 189.9 369 42.0
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.2e-46 189.9 346 44.8
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 7.9e-45 185.3 380 40.8
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.0e-44 184.9 388 39.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.8e-44 184.1 375 41.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 2.5e-43 180.3 384 41.1
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 9.6e-43 178.3 359 39.6
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.1e-42 177.2 367 40.6
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.7e-42 176.4 342 40.9
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.7e-42 176.4 355 41.4
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.4e-41 173.7 321 41.7
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.5e-40 171.0 349 41.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.0e-40 170.6 353 39.1
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 7.6e-40 168.7 355 40.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 9.9e-40 168.3 344 41.3
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.7e-39 167.5 323 41.5
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 6.4e-39 165.6 310 40.6
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.9e-38 164.1 381 38.8
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.2e-38 162.9 314 43.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.2e-37 161.4 192 60.4
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 3.5e-37 159.8 323 38.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.8e-36 157.5 231 48.1
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.3e-36 157.1 385 34.5
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 3.9e-36 156.4 384 38.0
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.5e-35 154.5 326 38.7
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 9.6e-35 151.8 329 39.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 2.8e-34 150.2 291 39.9
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-33 147.9 302 38.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 3.1e-33 146.7 330 40.6
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 5.8e-32 142.5 375 37.3
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.7e-31 141.0 398 34.4
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.4e-30 137.9 391 35.8
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 4.2e-30 136.3 338 36.4
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-29 134.8 236 42.8
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.5e-29 133.3 312 36.5
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.3e-28 131.3 319 37.6
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.3e-28 131.3 319 37.6
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-28 131.0 345 32.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-28 131.0 345 32.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.3e-28 130.6 324 37.3
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.9e-28 129.8 315 34.6
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 5.1e-28 129.4 221 44.3
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 8.7e-28 128.6 356 34.0
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-27 127.5 208 46.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 3.3e-27 126.7 319 35.4
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 3.3e-27 126.7 319 35.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.3e-27 126.7 235 43.8
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 9.7e-27 125.2 272 38.6
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.2e-26 124.0 323 36.8
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 6.3e-26 122.5 357 36.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 6.9e-25 119.0 342 36.3
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.9e-25 119.0 272 38.6
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.4e-24 116.7 215 40.0
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 7.6e-24 115.5 145 53.1
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.1e-22 111.7 274 37.6
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 1.9e-22 110.9 219 38.8
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.9e-22 110.9 269 37.9
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.0e-20 105.1 236 40.7
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.5e-19 100.5 313 33.9
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 9.7e-19 98.6 136 54.4
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.6e-16 90.5 216 36.6
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.8e-15 86.7 317 31.9
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.8e-15 86.7 317 31.9
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.0e-15 86.3 58 82.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-14 85.1 58 81.0
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-13 81.6 269 30.9
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 9.7e-11 72.0 295 27.1
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-09 68.6 94 47.9
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 1.4e-09 68.2 182 32.4
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 5.0e-07 59.7 151 35.8
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.9e-06 57.8 174 35.6


User provided reference genes

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