Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 8.3e-120 433.7 219 100.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.8e-98 362.8 209 86.1
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 7.1e-95 350.9 209 86.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.5e-92 342.4 213 82.2
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.1e-90 337.0 209 81.3
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.4e-90 335.9 209 81.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.2e-89 333.6 209 80.9
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 3.4e-89 332.0 211 79.6
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.9e-89 330.5 211 79.1
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-88 329.7 211 79.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 5.4e-87 324.7 208 78.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.3e-84 315.1 214 75.7
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-83 313.2 209 74.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 6.2e-83 311.2 209 74.2
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.2e-81 307.0 214 73.4
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-81 306.6 209 74.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.7e-80 303.1 216 69.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.9e-80 302.4 211 73.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.9e-80 302.4 209 72.2
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 6.4e-80 301.2 208 71.2
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.4e-79 299.3 209 73.7
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.1e-79 297.7 209 72.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.6e-78 296.6 209 70.3
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 3.5e-78 295.4 208 71.6
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 6.0e-78 294.7 208 71.2
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 6.0e-78 294.7 214 71.0
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 7.9e-78 294.3 208 70.7
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 7.9e-78 294.3 214 69.6
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.0e-77 292.4 210 70.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 5.1e-77 291.6 209 70.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 6.6e-77 291.2 212 70.8
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 8.7e-77 290.8 208 72.1
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.5e-76 289.3 209 72.7
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 4.3e-76 288.5 214 70.1
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 5.6e-76 288.1 212 69.3
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.4e-76 287.7 214 70.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.6e-75 285.4 214 69.6
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.8e-75 285.0 214 69.6
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 6.2e-75 284.6 209 69.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 8.1e-75 284.3 214 69.6
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.8e-74 283.1 208 68.3
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.0e-74 282.0 214 66.4
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 4.0e-74 282.0 208 69.2
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-73 280.4 216 66.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.5e-73 280.0 208 67.3
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.0e-73 279.6 211 67.8
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.0e-73 279.6 206 69.9
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 4.5e-73 278.5 208 66.8
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 7.6e-73 277.7 208 65.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.7e-72 276.6 222 66.2
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.7e-72 276.6 220 67.3
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.7e-72 276.6 225 64.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.8e-72 275.4 214 65.0
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.9e-72 275.0 215 66.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 8.4e-72 274.2 216 65.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 8.4e-72 274.2 209 69.9
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 8.4e-72 274.2 214 65.9
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 8.4e-72 274.2 214 65.9
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.1e-71 273.9 209 65.6
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 4.2e-71 271.9 212 65.6
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 5.5e-71 271.6 217 66.4
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 9.3e-71 270.8 222 63.1
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.6e-70 270.0 211 64.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.1e-70 269.6 215 65.6
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 3.5e-70 268.9 192 70.8
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.0e-70 268.1 215 64.7
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 7.9e-70 267.7 207 66.7
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.0e-69 267.3 221 63.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.3e-69 266.9 194 66.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.8e-69 266.5 215 64.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.3e-69 266.2 209 65.6
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.0e-69 265.8 208 66.3
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.0e-69 265.8 215 60.9
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 3.0e-69 265.8 208 66.8
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 3.9e-69 265.4 215 63.3
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 5.1e-69 265.0 215 64.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.1e-68 263.8 208 65.9
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.9e-68 263.1 228 61.4
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 5.6e-68 261.5 208 65.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 5.6e-68 261.5 189 69.8
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.3e-67 260.4 210 63.3
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.6e-67 260.0 213 63.8
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.2e-67 258.1 223 61.0
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.4e-66 256.9 205 63.9
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.4e-66 256.1 228 60.5
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 4.0e-66 255.4 218 61.0
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 4.0e-66 255.4 210 61.9
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 6.9e-66 254.6 214 63.1
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 6.9e-66 254.6 198 63.6
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 6.9e-66 254.6 210 61.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 6.9e-66 254.6 214 64.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.6e-65 252.7 222 59.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.4e-65 252.3 206 63.6
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.2e-64 249.6 215 61.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 2.2e-64 249.6 195 66.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 6.5e-64 248.1 216 59.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 6.5e-64 248.1 212 59.9
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 8.4e-64 247.7 189 67.2
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-63 247.3 211 63.5
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.4e-63 246.9 192 66.7
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 7.1e-63 244.6 194 63.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.1e-62 243.0 215 61.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.1e-62 243.0 214 60.3
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.3e-61 239.6 214 58.9
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.0e-61 239.2 200 60.0
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.1e-61 238.4 196 62.8
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.7e-61 238.0 193 63.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-60 237.3 208 62.0
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-60 237.3 193 62.7
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.5e-60 236.9 208 61.1
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.3e-60 235.7 202 62.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.1e-59 233.0 193 62.7
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 9.0e-58 227.6 194 61.9
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.2e-57 227.3 192 62.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.4e-57 225.7 213 56.8
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.0e-56 224.2 205 59.0
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 3.6e-54 215.7 147 76.2
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 3.0e-53 212.6 215 55.3
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.0e-53 212.6 215 55.3
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 7.4e-52 208.0 151 68.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.7e-52 207.6 149 72.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 2.8e-51 206.1 144 72.2
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 8.2e-51 204.5 212 53.8
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 6.9e-50 201.4 150 68.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 2.0e-49 199.9 213 52.6
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.9e-49 198.4 179 59.8
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.7e-48 196.8 222 52.3
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.4e-47 193.7 152 69.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 5.5e-47 191.8 213 50.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.1e-42 177.6 204 50.0
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 2.0e-41 173.3 183 53.0
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.5e-40 168.3 210 44.8
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 6.1e-38 161.8 194 49.5
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.0e-37 161.0 152 57.9
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.3e-36 156.0 188 46.8
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.8e-35 152.9 194 44.8
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.5e-33 146.0 187 46.5
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.0e-32 142.1 214 41.1
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.9e-31 140.2 196 42.3
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 3.6e-30 136.0 203 43.8
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 8.0e-30 134.8 180 42.8
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.4e-29 134.0 199 42.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-29 132.9 209 39.7
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 3.3e-28 129.4 201 42.3
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.4e-28 129.0 194 43.8
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 2.7e-25 119.8 198 39.4
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.9e-24 116.3 204 39.2
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.5e-23 113.2 186 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 5.5e-23 112.1 175 41.1
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.6e-22 109.4 68 76.5
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.0e-21 106.3 109 56.9
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 4.4e-20 102.4 186 35.5
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.8e-19 99.8 65 66.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.8e-19 99.8 166 39.2
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 6.3e-19 98.6 70 67.1
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.9e-16 89.7 188 34.6
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 8.5e-16 88.2 145 37.9
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 6.1e-14 82.0 61 60.7
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.5e-12 77.4 52 69.2
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.9e-08 63.2 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 5.0e-08 62.4 83 43.4
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.1e-06 57.0 39 61.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.6e-06 56.2 38 68.4


User provided reference genes

Program Settings