Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21549 Corchorus olitorius HOM05D000326 ORTHO05D003748 9.6e-15 82.4 45 100.0
COL.COLO4_31856 Corchorus olitorius HOM05D000326 ORTHO05D003748 3.1e-13 77.4 44 93.2
Duzib235G0545 Durio zibethinus HOM05D000326 ORTHO05D003748 7.6e-12 72.8 43 88.4
Gohir.A10G010200 Gossypium hirsutum HOM05D000326 ORTHO05D003748 1.0e-11 72.4 43 86.0
Thecc.06G231000 Theobroma cacao HOM05D000326 ORTHO05D003748 1.3e-11 72.0 44 84.1
Gohir.D10G009900 Gossypium hirsutum HOM05D000326 ORTHO05D003748 1.7e-11 71.6 43 86.0
Gorai.011G010800 Gossypium raimondii HOM05D000326 ORTHO05D003748 1.7e-11 71.6 43 86.0
CiPaw.10G076300 Carya illinoinensis HOM05D000182 ORTHO05D003748 4.2e-10 67.0 40 85.0
Ciclev10016358m.g Citrus clementina HOM05D000326 ORTHO05D003748 4.2e-10 67.0 40 82.5
COL.COLO4_31858 Corchorus olitorius HOM05D000326 ORTHO05D003748 4.2e-10 67.0 44 81.8
Gohir.A05G173700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 4.2e-10 67.0 44 81.8
Gorai.009G182100 Gossypium raimondii HOM05D000326 ORTHO05D003748 4.2e-10 67.0 44 81.8
MD10G1329100 Malus domestica HOM05D000326 ORTHO05D003748 4.2e-10 67.0 40 87.5
Sp6g04810 Schrenkiella parvula HOM05D000326 ORTHO05D003748 4.2e-10 67.0 44 79.5
CARHR253480 Cardamine hirsuta HOM05D000326 ORTHO05D003748 5.5e-10 66.6 44 79.5
DCAR_004868 Daucus carota HOM05D000326 ORTHO05D003748 5.5e-10 66.6 44 79.5
Thhalv10028901m.g Eutrema salsugineum HOM05D000326 ORTHO05D003748 5.5e-10 66.6 44 79.5
Oeu007162.2 Olea europaea HOM05D000326 ORTHO05D003748 5.5e-10 66.6 44 81.8
Peaxi162Scf00558g00111 Petunia axillaris HOM05D000326 ORTHO05D003748 5.5e-10 66.6 40 87.5
Sc17g0007650 Simmondsia chinensis HOM05D000326 ORTHO05D003748 5.5e-10 66.6 44 77.3
AT4G05530 Arabidopsis thaliana HOM05D000326 ORTHO05D003748 7.1e-10 66.2 44 79.5
BcaC01g00769 Brassica carinata HOM05D000326 ORTHO05D003748 7.1e-10 66.2 44 77.3
Cc09_g01030 Coffea canephora HOM05D000326 ORTHO05D003748 7.1e-10 66.2 44 84.1
AL6G47670 Arabidopsis lyrata HOM05D000326 ORTHO05D003748 9.3e-10 65.9 44 79.5
Cpa.g.sc75.124 Carica papaya HOM05D000326 ORTHO05D003748 9.3e-10 65.9 43 79.1
MD05G1355800 Malus domestica HOM05D000326 ORTHO05D003748 9.3e-10 65.9 40 85.0
Nn1g03354 Nelumbo nucifera HOM05D000326 ORTHO05D003748 9.3e-10 65.9 44 84.1
PGR004G1603 Punica granatum HOM05D000326 ORTHO05D003748 9.3e-10 65.9 40 85.0
Thecc.06G231100 Theobroma cacao HOM05D000326 ORTHO05D003748 9.3e-10 65.9 44 84.1
Cfa000128 Carpinus fangiana HOM05D000182 ORTHO05D003748 1.2e-09 65.5 40 82.5
Haze_06896 Corylus avellana HOM05D000182 ORTHO05D003748 1.2e-09 65.5 40 82.5
Gohir.D05G176700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 1.2e-09 65.5 44 79.5
Nitab4.5_0008006g0010 Nicotiana tabacum HOM05D000182 ORTHO05D003748 1.2e-09 65.5 44 81.8
Sp7g20400 Schrenkiella parvula HOM05D000326 ORTHO05D003748 1.2e-09 65.5 44 77.3
TWI38G0552 Tripterygium wilfordii HOM05D000326 ORTHO05D003748 1.2e-09 65.5 40 82.5
Eucgr.E03957 Eucalyptus grandis HOM05D000326 ORTHO05D003748 1.6e-09 65.1 40 85.0
ATR1128G081 Amborella trichopoda HOM05D000326 ORTHO05D003748 2.1e-09 64.7 40 82.5
Aqoxy1G04159 Aquilegia oxysepala HOM05D000326 ORTHO05D003748 2.1e-09 64.7 40 82.5
Carub.0006s3199 Capsella rubella HOM05D000326 ORTHO05D003748 2.1e-09 64.7 44 77.3
COL.COLO4_05207 Corchorus olitorius HOM05D001813 ORTHO05D015792 2.1e-09 64.7 44 77.3
Duzib192G0921 Durio zibethinus HOM05D000326 ORTHO05D003748 2.1e-09 64.7 40 82.5
Migut.H01598 Erythranthe guttata HOM05D000326 ORTHO05D003748 2.1e-09 64.7 40 82.5
Glyma.17G009400 Glycine max HOM05D000326 ORTHO05D003748 2.1e-09 64.7 38 89.5
Nitab4.5_0000574g0280 Nicotiana tabacum HOM05D000326 ORTHO05D003748 2.1e-09 64.7 44 81.8
SalBow1G6431 Salvia bowleyana HOM05D000326 ORTHO05D003748 2.1e-09 64.7 44 79.5
CAN.G1186.14 Capsicum annuum HOM05D000182 ORTHO05D003748 2.7e-09 64.3 40 85.0
DCAR_030879 Daucus carota HOM05D000182 ORTHO05D003748 2.7e-09 64.3 40 82.5
ECA248G0644 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.7e-09 64.3 40 80.0
Lj6g0028133 Lotus japonicus HOM05D000182 ORTHO05D003748 2.7e-09 64.3 40 85.0
MBI19_g29452_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 2.7e-09 64.3 42 78.6
QL03p008407 Quercus lobata HOM05D000326 ORTHO05D003748 2.7e-09 64.3 40 85.0
CANSAT56G0392 Cannabis sativa HOM05D000182 ORTHO05D003748 3.5e-09 63.9 40 82.5
Cc04_g03920 Coffea canephora HOM05D000326 ORTHO05D003748 3.5e-09 63.9 40 82.5
Gohir.A10G010100 Gossypium hirsutum HOM05D000326 ORTHO05D003748 3.5e-09 63.9 43 76.7
Gohir.D10G009800 Gossypium hirsutum HOM05D000326 ORTHO05D003748 3.5e-09 63.9 43 76.7
Gorai.011G010700 Gossypium raimondii HOM05D000326 ORTHO05D003748 3.5e-09 63.9 43 76.7
Phvul.003G082700 Phaseolus vulgaris HOM05D000326 ORTHO05D003748 3.5e-09 63.9 41 80.5
Aa31LG9G10000 Aethionema arabicum HOM05D000326 ORTHO05D003748 4.6e-09 63.5 44 75.0
A08p15630 Brassica napus HOM05D000326 ORTHO05D003748 4.6e-09 63.5 43 72.1
BraA08t33543Z Brassica rapa HOM05D000326 ORTHO05D003748 4.6e-09 63.5 43 72.1
CSS0023135 Camellia sinensis var. sinensis HOM05D000326 ORTHO05D003748 4.6e-09 63.5 44 79.5
AUR62012777 Chenopodium quinoa HOM05D000326 ORTHO05D003748 4.6e-09 63.5 41 82.9
Lsat_1_v5_gn_7_14601 Lactuca sativa HOM05D000326 ORTHO05D003748 4.6e-09 63.5 40 82.5
Lj1A1238T58 Lonicera japonica HOM05D000326 ORTHO05D003748 4.6e-09 63.5 44 81.8
Oeu002754.1 Olea europaea HOM05D000326 ORTHO05D003748 4.6e-09 63.5 38 86.8
Pp3c18_20320 Physcomitrium patens HOM05D000326 ORTHO05D003748 4.6e-09 63.5 38 84.2
VMungo1215G0871 Vigna mungo HOM05D000326 ORTHO05D003748 4.6e-09 63.5 41 80.5
Atru.chr1.2493 Acer truncatum HOM05D000326 ORTHO05D003748 6.1e-09 63.2 40 80.0
Ah.14g087770 Amaranthus hybridus HOM05D000326 ORTHO05D003748 6.1e-09 63.2 44 79.5
MSTRG.14619 Avicennia marina HOM05D000326 ORTHO05D003748 6.1e-09 63.2 40 80.0
BcaB01g01773 Brassica carinata HOM05D000326 ORTHO05D003748 6.1e-09 63.2 42 78.6
Dinv07384 Davidia involucrata HOM05D000326 ORTHO05D003748 6.1e-09 63.2 44 79.5
FAN25G3275 Fragaria x ananassa HOM05D000326 ORTHO05D003748 6.1e-09 63.2 40 82.5
PSO017G5127 Papaver somniferum HOM05D000326 ORTHO05D003748 6.1e-09 63.2 41 78.0
PSO675G4503 Papaver somniferum HOM05D000326 ORTHO05D003748 6.1e-09 63.2 41 78.0
PGSC0003DMG400013266 Solanum tuberosum HOM05D000182 ORTHO05D003748 6.1e-09 63.2 44 75.0
vmacro23325 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 6.1e-09 63.2 44 77.3
ECA248G1340 Erigeron canadensis HOM05D000326 ORTHO05D003748 7.9e-09 62.8 42 78.6
Peaxi162Scf00990g00125 Petunia axillaris HOM05D000182 ORTHO05D003748 7.9e-09 62.8 38 84.2
Sed0028075 Sechium edule HOM05D000326 ORTHO05D003748 7.9e-09 62.8 40 80.0
Glyma.02G116900 Glycine max HOM05D000326 ORTHO05D003748 1.0e-08 62.4 40 82.5
HanXRQChr01g0006611 Helianthus annuus HOM05D000326 ORTHO05D003748 1.0e-08 62.4 43 74.4
HanXRQChr15g0470861 Helianthus annuus HOM05D000326 ORTHO05D003748 1.0e-08 62.4 40 80.0
Os09g0133200 Oryza sativa ssp. japonica HOM05D000326 ORTHO05D003748 1.0e-08 62.4 42 76.2
Peaxi162Scf00442g00526 Petunia axillaris HOM05D000326 ORTHO05D003748 1.0e-08 62.4 44 79.5
Prupe.4G012900 Prunus persica HOM05D000326 ORTHO05D003748 1.0e-08 62.4 40 82.5
QL05p069854 Quercus lobata HOM05D000182 ORTHO05D003748 1.0e-08 62.4 40 80.0
QL10p003427 Quercus lobata HOM05D000182 ORTHO05D003748 1.0e-08 62.4 40 80.0
Hma1.2p1_0660F.1_g197520 Hydrangea macrophylla HOM05D000326 ORTHO05D003748 1.3e-08 62.0 38 84.2
Lalb_Chr07g0177031 Lupinus albus HOM05D000326 ORTHO05D003748 1.3e-08 62.0 38 84.2
Nitab4.5_0000143g0480 Nicotiana tabacum HOM05D000182 ORTHO05D003748 1.3e-08 62.0 38 84.2
arahy.Tifrunner.gnm1.ann1.1L9BHC Arachis hypogaea HOM05D000326 ORTHO05D003748 1.8e-08 61.6 40 80.0
arahy.Tifrunner.gnm1.ann1.GK2FLE Arachis hypogaea HOM05D000326 ORTHO05D003748 1.8e-08 61.6 40 80.0
BcaC04g21261 Brassica carinata HOM05D000326 ORTHO05D003748 1.8e-08 61.6 42 76.2
A09p26600 Brassica napus HOM05D000326 ORTHO05D003748 1.8e-08 61.6 42 76.2
C03p84080 Brassica napus HOM05D000326 ORTHO05D003748 1.8e-08 61.6 43 72.1
C09p33720 Brassica napus HOM05D000326 ORTHO05D003748 1.8e-08 61.6 42 76.2
BolC9t56206H Brassica oleracea HOM05D000326 ORTHO05D003748 1.8e-08 61.6 42 76.2
BraA09t38233Z Brassica rapa HOM05D000326 ORTHO05D003748 1.8e-08 61.6 42 76.2
ClCG01G009940 Citrullus lanatus HOM05D000326 ORTHO05D003748 1.8e-08 61.6 40 77.5
HanXRQChr10g0282041 Helianthus annuus HOM05D000326 ORTHO05D003748 1.8e-08 61.6 40 80.0
QL03p008385 Quercus lobata HOM05D000326 ORTHO05D003748 1.8e-08 61.6 38 81.6
QL05p069860 Quercus lobata HOM05D000326 ORTHO05D003748 1.8e-08 61.6 38 81.6
QL05p069871 Quercus lobata HOM05D000326 ORTHO05D003748 1.8e-08 61.6 38 81.6
QL10p003421 Quercus lobata HOM05D000326 ORTHO05D003748 1.8e-08 61.6 38 81.6
SalBow1G6402 Salvia bowleyana HOM05D000326 ORTHO05D003748 1.8e-08 61.6 44 77.3
Sopen04g006770 Solanum pennellii HOM05D000326 ORTHO05D003748 1.8e-08 61.6 44 77.3
TAR624G0942 Trochodendron aralioides HOM05D000326 ORTHO05D003748 1.8e-08 61.6 40 80.0
Lj4g0020890 Lotus japonicus HOM05D000326 ORTHO05D003748 2.3e-08 61.2 40 80.0
Nitab4.5_0001198g0220 Nicotiana tabacum HOM05D000326 ORTHO05D003748 2.3e-08 61.2 40 82.5
unitig_61.g26095 Utricularia gibba HOM05D000326 ORTHO05D003748 2.3e-08 61.2 38 78.9
BcaB03g11725 Brassica carinata HOM05D000326 ORTHO05D003748 3.0e-08 60.8 43 72.1
AUR62021878 Chenopodium quinoa HOM05D000326 ORTHO05D003748 3.0e-08 60.8 44 77.3
DCAR_002211 Daucus carota HOM05D000326 ORTHO05D003748 3.0e-08 60.8 44 75.0
FAN21G2425 Fragaria x ananassa HOM05D000326 ORTHO05D003748 3.0e-08 60.8 40 80.0
Rhsim02G0104500 Rhododendron simsii HOM05D000326 ORTHO05D003748 3.0e-08 60.8 44 75.0
arahy.Tifrunner.gnm1.ann1.H48B83 Arachis hypogaea HOM05D000326 ORTHO05D003748 3.9e-08 60.5 40 77.5
CDE04G1138 Ceratophyllum demersum HOM05D000326 ORTHO05D003748 3.9e-08 60.5 38 81.6
AUR62021879 Chenopodium quinoa HOM05D000326 ORTHO05D003748 3.9e-08 60.5 41 80.5
Glyma.15G113300 Glycine max HOM05D000182 ORTHO05D003748 3.9e-08 60.5 40 80.0
PSO210G3324 Papaver somniferum HOM05D000326 ORTHO05D003748 3.9e-08 60.5 41 73.2
Psat4g003600 Pisum sativum HOM05D000326 ORTHO05D003748 3.9e-08 60.5 40 77.5
Sabra11G0013700 Salix brachista HOM05D000182 ORTHO05D003748 3.9e-08 60.5 41 78.0
Zm00001eb305490 Zea mays HOM05D000326 ORTHO05D003748 3.9e-08 60.5 41 78.0
arahy.Tifrunner.gnm1.ann1.5KTK5R Arachis hypogaea HOM05D000182 ORTHO05D003748 5.1e-08 60.1 37 83.8
arahy.Tifrunner.gnm1.ann1.C9QTWM Arachis hypogaea HOM05D000182 ORTHO05D003748 5.1e-08 60.1 37 83.8
BolC3t20687H Brassica oleracea HOM05D000326 ORTHO05D003748 5.1e-08 60.1 38 78.9
Ca_21053_v3 Cicer arietinum L. HOM05D000326 ORTHO05D003748 5.1e-08 60.1 38 78.9
Lsat_1_v5_gn_0_39500 Lactuca sativa HOM05D000326 ORTHO05D003748 5.1e-08 60.1 40 75.0
Mapoly0189s0004 Marchantia polymorpha HOM05D000326 ORTHO05D003748 5.1e-08 60.1 40 77.5
RcHm_v2.0_Chr5g0001721 Rosa chinensis HOM05D000326 ORTHO05D003748 5.1e-08 60.1 40 77.5
Solyc04g014670.3 Solanum lycopersicum HOM05D000326 ORTHO05D003748 5.1e-08 60.1 44 75.0
THA.LOC104813498 Tarenaya hassleriana HOM05D000326 ORTHO05D003748 5.1e-08 60.1 38 81.6
Zm00001eb294750 Zea mays HOM05D000326 ORTHO05D003748 5.1e-08 60.1 41 73.2
CAN.G1263.7 Capsicum annuum HOM05D000326 ORTHO05D003748 6.7e-08 59.7 38 81.6
Medtr4g132850 Medicago truncatula HOM05D000326 ORTHO05D003748 6.7e-08 59.7 40 77.5
Hund23413 Selenicereus undatus HOM05D000326 ORTHO05D003748 6.7e-08 59.7 38 84.2
CsaV3_1G045840 Cucumis sativus L. HOM05D000326 ORTHO05D003748 8.7e-08 59.3 40 75.0
FvH4_3g01160 Fragaria vesca HOM05D000326 ORTHO05D003748 8.7e-08 59.3 40 77.5
Glyma.09G008900 Glycine max HOM05D000182 ORTHO05D003748 8.7e-08 59.3 38 81.6
Sabra11G0013500 Salix brachista HOM05D000326 ORTHO05D003748 8.7e-08 59.3 38 78.9
Sabra11G0013600 Salix brachista HOM05D000326 ORTHO05D003748 8.7e-08 59.3 38 78.9
SMO364G0844 Selaginella moellendorffii HOM05D000326 ORTHO05D003748 8.7e-08 59.3 39 79.5
EL10Ac8g20163 Beta vulgaris HOM05D000326 ORTHO05D003748 1.1e-07 58.9 44 70.5
MD05G1355400 Malus domestica HOM05D000326 ORTHO05D003748 1.1e-07 58.9 40 77.5
Manes.16G001800 Manihot esculenta HOM05D000326 ORTHO05D003748 1.1e-07 58.9 43 72.1
vmacro15785 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 1.5e-07 58.5 44 72.7
CANSAT56G1453 Cannabis sativa HOM05D000326 ORTHO05D003748 1.9e-07 58.2 40 77.5
Phvul.006G144400 Phaseolus vulgaris HOM05D000182 ORTHO05D003748 1.9e-07 58.2 40 77.5
Rhsim02G0104400 Rhododendron simsii HOM05D000326 ORTHO05D003748 1.9e-07 58.2 38 76.3
TPR.G37042 Trifolium pratense HOM05D000326 ORTHO05D003748 1.9e-07 58.2 40 72.5
VMungo0540G1586 Vigna mungo HOM05D000182 ORTHO05D003748 1.9e-07 58.2 40 77.5
CANSAT56G0281 Cannabis sativa HOM05D000326 ORTHO05D003748 2.5e-07 57.8 40 77.5
CANSAT56G0433 Cannabis sativa HOM05D000326 ORTHO05D003748 3.3e-07 57.4 40 75.0
CBR_g38950 Chara braunii HOM05D000326 ORTHO05D003748 3.3e-07 57.4 44 68.2
MELO3C021704.2 Cucumis melo HOM05D000326 ORTHO05D003748 3.3e-07 57.4 40 72.5
Potri.011G022400 Populus trichocarpa HOM05D000326 ORTHO05D003748 3.3e-07 57.4 41 73.2
SEGI_32087 Sequoiadendron giganteum HOM05D000326 ORTHO05D003748 3.3e-07 57.4 38 76.3
Duzib235G0859 Durio zibethinus HOM05D000182 ORTHO05D003748 4.3e-07 57.0 38 78.9
Manes.09G026500 Manihot esculenta HOM05D000326 ORTHO05D003748 4.3e-07 57.0 43 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2394 Anthoceros agrestis HOM05D000326 ORTHO05D003748 5.7e-07 56.6 38 76.3
Cre03.g191850 Chlamydomonas reinhardtii HOM05D000326 ORTHO05D003748 2.2e-06 54.7 38 76.3
Cpa.g.sc75.123 Carica papaya HOM05D000182 ORTHO05D003748 2.8e-06 54.3 37 75.7
EL10Ac8g20162 Beta vulgaris HOM05D000326 ORTHO05D003748 4.8e-06 53.5 40 72.5
SGA_v2.0_scaffold89G27492 Striga asiatica HOM05D000326 ORTHO05D003748 4.8e-06 53.5 33 84.8
MBI19_g29453_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 6.3e-06 53.1 34 79.4
HPP92_003052 Vanilla planifolia HOM05D000326 ORTHO05D003748 8.2e-06 52.8 38 71.1


User provided reference genes

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