Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.4e-47 192.6 96 100.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.6e-36 154.1 88 86.4
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 8.1e-11 70.5 37 89.2
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.1e-10 70.1 37 86.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.1e-10 70.1 37 86.5
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 86.5
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.8e-10 69.3 37 89.2
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.4e-10 68.9 42 78.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.4e-10 68.9 37 86.5
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 2.4e-10 68.9 37 86.5
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 2.4e-10 68.9 37 86.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.4e-10 68.9 37 86.5
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.4e-10 68.9 37 89.2
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.1e-10 68.6 36 88.9
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.1e-10 68.6 37 86.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 4.0e-10 68.2 37 83.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.0e-10 68.2 37 86.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 4.0e-10 68.2 37 86.5
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.2e-10 67.8 37 86.5
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 83.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 83.8
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 83.8
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 83.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 86.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 86.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 83.8
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 86.5
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 6.8e-10 67.4 37 86.5
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.9e-10 67.0 37 83.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 8.9e-10 67.0 42 78.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 8.9e-10 67.0 37 83.8
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.2e-09 66.6 42 76.2
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.2e-09 66.6 37 83.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 81.1
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.5e-09 66.2 37 83.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 83.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 83.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 83.8
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 81.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 83.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.0e-09 65.9 37 83.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 81.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 81.1
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 81.1
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 81.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 83.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.6e-09 65.5 37 83.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.4e-09 65.1 37 81.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.4e-09 65.1 37 81.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.4e-09 65.1 37 78.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.4e-09 65.1 39 82.1
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 4.4e-09 64.7 37 83.8
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 4.4e-09 64.7 45 71.1
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 83.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 83.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 83.8
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 78.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 78.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 5.8e-09 64.3 37 78.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 7.6e-09 63.9 37 81.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.9e-09 63.5 37 81.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.3e-08 63.2 37 75.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.3e-08 63.2 37 81.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 78.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.7e-08 62.8 37 81.1
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.9e-08 62.0 37 81.1
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.9e-08 62.0 37 78.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.8e-08 61.6 37 75.7
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.8e-08 61.6 37 75.7
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.8e-08 61.6 37 78.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 4.9e-08 61.2 35 82.9
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 6.4e-08 60.8 37 73.0
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 8.4e-08 60.5 37 75.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-07 59.7 37 78.4
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 7.1e-07 57.4 37 75.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 7.1e-07 57.4 37 75.7
COL.COLO4_17123 Corchorus olitorius HOM05D000188 ORTHO05D003976 2.7e-06 55.5 55 56.4
Thecc.03G235600 Theobroma cacao HOM05D000188 ORTHO05D003976 7.8e-06 53.9 55 54.5


User provided reference genes

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