Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21092 Corchorus olitorius HOM05D005568 ORTHO05D155643 3.9e-45 184.5 97 100.0
COL.COLO4_27886 Corchorus olitorius HOM05D005568 ORTHO05D006940 3.7e-11 71.6 37 97.3
Duzib248G1426 Durio zibethinus HOM05D005568 ORTHO05D006940 1.1e-10 70.1 37 94.6
Thecc.02G330600 Theobroma cacao HOM05D005568 ORTHO05D006940 2.4e-10 68.9 37 91.9
Duzib248G1642 Durio zibethinus HOM05D005568 ORTHO05D006940 3.1e-10 68.6 37 89.2
Gohir.A12G161300 Gossypium hirsutum HOM05D005568 ORTHO05D006940 4.1e-10 68.2 67 58.2
Gohir.D12G164600 Gossypium hirsutum HOM05D005568 ORTHO05D006940 9.0e-10 67.0 67 58.2
Gorai.008G177200 Gossypium raimondii HOM05D005568 ORTHO05D006940 9.0e-10 67.0 67 58.2
THA.LOC104824056 Tarenaya hassleriana HOM05D005568 ORTHO05D006940 1.5e-09 66.2 67 55.2
FAN22G1579 Fragaria x ananassa HOM05D005568 ORTHO05D006940 7.6e-09 63.9 37 83.8
FvH4_4g30090 Fragaria vesca HOM05D005568 ORTHO05D006940 1.0e-08 63.5 37 86.5
FAN07G0232 Fragaria x ananassa HOM05D005568 ORTHO05D006940 1.0e-08 63.5 37 86.5
FAN12G3709 Fragaria x ananassa HOM05D005568 ORTHO05D006940 1.0e-08 63.5 37 86.5
FAN17G2544 Fragaria x ananassa HOM05D005568 ORTHO05D006940 1.0e-08 63.5 37 86.5
Aa31LG1G1170 Aethionema arabicum HOM05D005568 ORTHO05D006940 1.7e-08 62.8 37 81.1
CSS0039095 Camellia sinensis var. sinensis HOM05D005568 ORTHO05D006940 2.2e-08 62.4 37 81.1
Medtr5g044720 Medicago truncatula HOM05D005568 ORTHO05D006940 3.8e-08 61.6 37 81.1
BcaB02g06475 Brassica carinata HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 78.4
BcaC05g25284 Brassica carinata HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 78.4
C05p11620 Brassica napus HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 78.4
BolC5t29908H Brassica oleracea HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 78.4
CARHR014160 Cardamine hirsuta HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 78.4
Ciclev10031554m.g Citrus clementina HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 83.8
Prupe.1G286700 Prunus persica HOM05D005568 ORTHO05D006940 5.0e-08 61.2 37 81.1
Sp1g12160 Schrenkiella parvula HOM05D005568 ORTHO05D006940 6.5e-08 60.8 37 78.4
AT1G13770 Arabidopsis thaliana HOM05D005568 ORTHO05D006940 8.5e-08 60.5 37 75.7
A06p09820 Brassica napus HOM05D005568 ORTHO05D006940 8.5e-08 60.5 37 78.4
Carub.0001s1349 Capsella rubella HOM05D005568 ORTHO05D006940 8.5e-08 60.5 37 78.4
Cpa.g.sc1.123 Carica papaya HOM05D005568 ORTHO05D006940 8.5e-08 60.5 37 78.4
CsaV3_6G033680 Cucumis sativus L. HOM05D005568 ORTHO05D006940 1.1e-07 60.1 37 81.1
Thhalv10007655m.g Eutrema salsugineum HOM05D005568 ORTHO05D006940 1.1e-07 60.1 67 49.3
AL1G25570 Arabidopsis lyrata HOM05D005568 ORTHO05D006940 1.4e-07 59.7 37 75.7
BraA06t24172Z Brassica rapa HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 75.7
Ca_04974_v3 Cicer arietinum L. HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 78.4
Lalb_Chr10g0098831 Lupinus albus HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 78.4
MD16G1061400 Malus domestica HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 75.7
Phvul.003G042500 Phaseolus vulgaris HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 81.1
TPR.G24479 Trifolium pratense HOM05D005568 ORTHO05D006940 1.9e-07 59.3 37 78.4
Actinidia16167 Actinidia chinensis HOM05D005568 ORTHO05D006940 2.5e-07 58.9 37 78.4
CAN.G616.43 Capsicum annuum HOM05D005568 ORTHO05D006940 2.5e-07 58.9 37 81.1
ClCG08G010410 Citrullus lanatus HOM05D005568 ORTHO05D006940 2.5e-07 58.9 37 78.4
MELO3C011420.2 Cucumis melo HOM05D005568 ORTHO05D006940 2.5e-07 58.9 37 78.4
Rhsim09G0127600 Rhododendron simsii HOM05D005568 ORTHO05D006940 2.5e-07 58.9 37 78.4
arahy.Tifrunner.gnm1.ann1.H69QIP Arachis hypogaea HOM05D005568 ORTHO05D006940 3.2e-07 58.5 37 75.7
arahy.Tifrunner.gnm1.ann1.MYF1K6 Arachis hypogaea HOM05D005568 ORTHO05D006940 3.2e-07 58.5 37 75.7
Glyma.01G059200 Glycine max HOM05D005568 ORTHO05D006940 4.2e-07 58.2 37 75.7
Glyma.02G116633 Glycine max HOM05D005568 ORTHO05D006940 4.2e-07 58.2 37 75.7
Solyc05g012290.3 Solanum lycopersicum HOM05D005568 ORTHO05D006940 4.2e-07 58.2 37 78.4
Sopen05g007120 Solanum pennellii HOM05D005568 ORTHO05D006940 4.2e-07 58.2 37 78.4
Potri.008G095700 Populus trichocarpa HOM05D005568 ORTHO05D006940 5.5e-07 57.8 37 78.4
VMungo1215G2929 Vigna mungo HOM05D005568 ORTHO05D006940 5.5e-07 57.8 37 75.7
Hma1.2p1_0566F.1_g179750 Hydrangea macrophylla HOM05D005568 ORTHO05D006940 7.2e-07 57.4 37 75.7
Manes.01G027700 Manihot esculenta HOM05D005568 ORTHO05D006940 7.2e-07 57.4 37 78.4
QL12p030796 Quercus lobata HOM05D005568 ORTHO05D006940 7.2e-07 57.4 37 75.7
Sabra08G0072100 Salix brachista HOM05D005568 ORTHO05D006940 7.2e-07 57.4 37 75.7
Dinv16731 Davidia involucrata HOM05D005568 ORTHO05D006940 9.3e-07 57.0 36 80.6
Eucgr.B03151 Eucalyptus grandis HOM05D005568 ORTHO05D006940 9.3e-07 57.0 63 50.8
Sed0026263 Sechium edule HOM05D005568 ORTHO05D006940 9.3e-07 57.0 37 75.7
CANSAT64G0560 Cannabis sativa HOM05D005568 ORTHO05D006940 1.2e-06 56.6 37 75.7
Lj2g0017860 Lotus japonicus HOM05D005568 ORTHO05D006940 1.2e-06 56.6 37 73.0
vmacro10423 Vaccinium macrocarpon HOM05D005568 ORTHO05D006940 1.2e-06 56.6 37 73.0
CiPaw.05G125400 Carya illinoinensis HOM05D005568 ORTHO05D006940 1.6e-06 56.2 37 75.7
PGSC0003DMG400028318 Solanum tuberosum HOM05D005568 ORTHO05D006940 1.6e-06 56.2 37 75.7
HanXRQChr08g0211781 Helianthus annuus HOM05D005568 ORTHO05D006940 2.1e-06 55.8 37 73.0
Nn3g17444 Nelumbo nucifera HOM05D005568 ORTHO05D006940 2.1e-06 55.8 37 73.0
TWI31G1152 Tripterygium wilfordii HOM05D005568 ORTHO05D006940 2.1e-06 55.8 37 73.0
PSO017G2580 Papaver somniferum HOM05D005568 ORTHO05D006940 2.7e-06 55.5 37 70.3
PSO478G2131 Papaver somniferum HOM05D005568 ORTHO05D006940 2.7e-06 55.5 37 70.3
Peaxi162Scf00175g00125 Petunia axillaris HOM05D005568 ORTHO05D006940 2.7e-06 55.5 37 75.7
GSVIVG01012218001 Vitis vinifera HOM05D005568 ORTHO05D006940 2.7e-06 55.5 37 73.0
Cc11_g11980 Coffea canephora HOM05D005568 ORTHO05D006940 3.6e-06 55.1 37 73.0
DCAR_030041 Daucus carota HOM05D005568 ORTHO05D006940 3.6e-06 55.1 37 70.3
Lj6A779T68 Lonicera japonica HOM05D005568 ORTHO05D006940 3.6e-06 55.1 37 73.0
HPP92_024923 Vanilla planifolia HOM05D005568 ORTHO05D006940 3.6e-06 55.1 37 70.3
Atru.BG.280.p Acer truncatum HOM05D005568 ORTHO05D006940 4.6e-06 54.7 67 49.3
Atru.chr11.1627 Acer truncatum HOM05D005568 ORTHO05D006940 4.6e-06 54.7 67 49.3
Nitab4.5_0000231g0340 Nicotiana tabacum HOM05D005568 ORTHO05D006940 4.6e-06 54.7 37 73.0
Nitab4.5_0001487g0140 Nicotiana tabacum HOM05D005568 ORTHO05D006940 4.6e-06 54.7 37 73.0
TAR622G0890 Trochodendron aralioides HOM05D005568 ORTHO05D006940 4.6e-06 54.7 37 75.7
Zm00001eb400240 Zea mays HOM05D005568 ORTHO05D006940 6.1e-06 54.3 61 49.2
Ah.12g059120 Amaranthus hybridus HOM05D005568 ORTHO05D006940 7.9e-06 53.9 37 73.0
SGA_v2.0_scaffold36G14456 Striga asiatica HOM05D005568 ORTHO05D006940 7.9e-06 53.9 37 70.3


User provided reference genes

Program Settings