Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.3e-188 662.1 344 100.0
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 94.8
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.0e-172 607.8 345 91.9
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.0e-172 607.8 345 91.9
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.3e-171 604.0 345 91.6
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.6e-170 602.8 345 91.3
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.1e-169 598.6 345 91.0
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 2.0e-160 569.3 345 85.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 9.9e-160 567.0 345 83.5
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 9.9e-160 567.0 344 85.2
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.4e-158 563.1 345 84.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 2.4e-158 562.4 345 84.3
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.7e-157 558.9 345 83.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 4.6e-157 558.1 345 83.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.3e-156 556.6 345 83.8
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 8.6e-156 553.9 347 82.7
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 8.6e-156 553.9 345 81.7
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 5.6e-155 551.2 345 83.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 9.6e-155 550.4 345 83.5
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.0e-153 545.0 345 81.4
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 5.2e-153 544.7 345 82.3
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.2e-152 543.5 345 82.0
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.0e-152 542.7 346 81.5
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 4.4e-152 541.6 345 81.4
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 5.8e-152 541.2 345 81.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 9.9e-152 540.4 346 80.6
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.9e-152 540.4 345 81.2
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.9e-152 540.4 345 81.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.2e-151 539.3 343 80.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.8e-151 538.5 346 79.5
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 4.9e-151 538.1 346 80.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 4.9e-151 538.1 343 80.8
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 8.4e-151 537.3 343 79.9
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.1e-150 537.0 345 80.9
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.4e-150 535.8 343 79.3
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 3.2e-150 535.4 346 80.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 7.1e-150 534.3 343 79.6
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 9.3e-150 533.9 343 79.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.6e-149 533.1 348 80.2
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.1e-149 532.7 343 79.6
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.1e-149 532.7 345 79.7
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 4.6e-149 531.6 350 78.6
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.0e-148 530.4 343 79.0
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.0e-148 530.4 343 79.0
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.7e-148 529.6 343 79.0
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.7e-148 529.6 345 78.3
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.3e-148 529.3 343 78.7
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.3e-148 529.3 345 77.7
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.0e-148 528.9 343 78.7
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.0e-148 528.9 343 78.7
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.0e-148 528.9 343 78.7
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.5e-147 526.6 343 78.4
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.5e-147 525.8 336 81.0
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 4.3e-147 525.0 355 76.6
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 7.3e-147 524.2 343 78.4
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 7.3e-147 524.2 344 79.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.1e-146 522.7 355 76.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 6.2e-146 521.2 345 77.1
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.8e-145 519.6 346 77.7
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 5.3e-145 518.1 345 76.2
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 77.4
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 77.1
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.6e-144 515.8 345 76.8
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.7e-143 513.1 341 77.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 3.8e-143 511.9 345 76.8
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 4.9e-143 511.5 345 75.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 8.4e-143 510.8 336 77.7
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 8.4e-143 510.8 345 78.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 8.4e-143 510.8 351 75.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.9e-142 509.6 343 74.9
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.4e-142 509.2 345 75.4
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.2e-142 508.8 345 75.9
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 4.2e-142 508.4 347 77.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.7e-141 505.8 336 75.9
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.7e-141 505.8 391 69.1
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 6.0e-141 504.6 347 76.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 7.9e-141 504.2 358 73.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.9e-140 501.9 345 74.8
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 5.1e-140 501.5 345 76.5
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 5.1e-140 501.5 367 72.5
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.3e-139 498.8 346 76.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.3e-139 498.4 345 76.2
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 3.6e-138 495.4 345 75.1
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.8e-137 493.0 343 74.6
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 4.0e-137 491.9 325 77.2
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 9.0e-137 490.7 415 66.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.3e-135 486.9 347 74.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.2e-134 482.3 345 74.8
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 1.2e-133 480.3 272 90.1
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 3.0e-132 475.7 308 77.6
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.9e-131 473.0 313 78.9
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.6e-130 469.9 336 70.8
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.8e-130 469.2 308 79.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.1e-129 467.2 344 71.5
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.5e-128 463.4 336 72.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.0e-128 463.0 272 84.2
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 4.2e-126 455.3 345 70.4
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.5e-125 452.2 308 75.3
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 5.1e-124 448.4 345 69.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.3e-122 443.7 343 67.1
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.4e-120 435.6 401 62.3
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 6.5e-119 431.4 295 76.9
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 4.2e-118 428.7 418 59.8
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 6.1e-117 424.9 345 65.5
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.4e-115 417.9 345 64.6
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 6.9e-113 411.4 222 95.0
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.0e-111 407.5 292 73.3
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 6.5e-111 404.8 310 71.6
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.0e-100 370.9 222 83.8
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.3e-100 369.8 383 52.7
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.3e-99 365.9 345 59.4
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.3e-98 364.0 343 59.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.3e-98 361.7 206 91.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.2e-94 349.4 246 74.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.8e-87 325.9 435 49.2
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.1e-86 324.3 344 54.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 5.9e-80 302.0 327 50.2
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.0e-79 301.2 249 63.1
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.6e-77 293.9 200 75.0
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.7e-77 293.1 249 63.9
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 9.8e-75 284.6 169 84.6
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.1e-65 252.7 273 45.4
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.6e-64 249.2 255 54.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 7.0e-57 225.3 165 72.1
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.7e-55 220.7 144 81.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.2e-53 214.5 238 54.2
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.2e-53 214.5 144 71.5
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.3e-47 194.5 194 55.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.3e-47 193.7 184 58.2
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.5e-46 191.0 110 85.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.1e-44 183.3 131 73.3
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 4.0e-44 183.0 333 35.4
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.7e-39 167.5 335 33.1
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 3.3e-38 163.3 323 33.4
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-37 160.6 95 87.4
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 6.2e-37 159.1 132 67.4
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.1e-36 158.3 312 33.3
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.3e-31 140.6 113 67.3
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 2.0e-27 127.5 74 86.5
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 5.1e-23 112.8 106 60.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.3e-22 110.2 95 66.3
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.0e-20 103.2 73 68.5
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 3.3e-06 57.0 38 73.7


User provided reference genes

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