Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_21036 Corchorus olitorius HOM05D001443 ORTHO05D001352 9.3e-180 633.6 371 100.0
Duzib150G1159 Durio zibethinus HOM05D001443 ORTHO05D001352 1.8e-146 523.1 384 79.4
Thecc.09G052100 Theobroma cacao HOM05D001443 ORTHO05D001352 1.1e-129 467.2 385 79.7
Duzib168G0433 Durio zibethinus HOM05D001443 ORTHO05D001352 1.6e-115 420.2 377 66.3
Gohir.D05G045000 Gossypium hirsutum HOM05D001443 ORTHO05D001352 5.0e-109 398.7 383 67.6
Gorai.009G046100 Gossypium raimondii HOM05D001443 ORTHO05D001352 5.0e-109 398.7 383 67.6
Gohir.D06G088400 Gossypium hirsutum HOM05D001443 ORTHO05D001352 4.2e-108 395.6 383 66.3
Gorai.010G102100 Gossypium raimondii HOM05D001443 ORTHO05D001352 2.7e-107 392.9 383 65.8
Gohir.A06G088300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 1.9e-100 370.2 384 63.5
Gohir.A05G043300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 4.3e-100 369.0 383 64.5
Prupe.1G414200 Prunus persica HOM05D001443 ORTHO05D001352 4.4e-97 359.0 389 61.7
Sabra18G0049800 Salix brachista HOM05D001443 ORTHO05D001352 2.4e-95 353.2 392 64.3
CiPaw.16G029500 Carya illinoinensis HOM05D001443 ORTHO05D001352 4.6e-94 349.0 390 61.8
Manes.16G078700 Manihot esculenta HOM05D001443 ORTHO05D001352 1.0e-93 347.8 392 59.2
QL02p001442 Quercus lobata HOM05D001443 ORTHO05D001352 1.8e-90 337.0 392 64.8
Potri.018G055300 Populus trichocarpa HOM05D001443 ORTHO05D001352 4.0e-90 335.9 391 59.3
MD15G1061600 Malus domestica HOM05D001443 ORTHO05D001352 4.6e-86 322.4 394 59.9
CSS0046346 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.0e-85 321.2 392 54.1
CiPaw.16G029700 Carya illinoinensis HOM05D001443 ORTHO05D001352 1.5e-84 317.4 306 68.3
TWI34G1891 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 3.6e-83 312.8 388 56.2
Potri.006G231800 Populus trichocarpa HOM05D001443 ORTHO05D001352 2.2e-80 303.5 392 56.4
Cpa.g.sc7.198 Carica papaya HOM05D001443 ORTHO05D001352 3.2e-79 299.7 390 60.3
Dinv27972 Davidia involucrata HOM05D001443 ORTHO05D001352 3.2e-79 299.7 335 60.9
Ciclev10007663m.g Citrus clementina HOM05D001443 ORTHO05D001352 6.0e-78 295.4 385 57.4
VMungo1309G3077 Vigna mungo HOM05D001443 ORTHO05D001352 7.8e-78 295.0 388 54.6
TWI32G0683 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 1.3e-77 294.3 392 59.7
Glyma.14G093200 Glycine max HOM05D001443 ORTHO05D001352 1.1e-76 291.2 398 54.5
MELO3C010761.2 Cucumis melo HOM05D001443 ORTHO05D001352 2.5e-76 290.0 393 56.0
CsaV3_2G025660 Cucumis sativus L. HOM05D001443 ORTHO05D001352 1.6e-75 287.3 396 55.6
RcHm_v2.0_Chr6g0310631 Rosa chinensis HOM05D001443 ORTHO05D001352 2.3e-74 283.5 396 54.0
Sed0026795 Sechium edule HOM05D001443 ORTHO05D001352 2.2e-72 276.9 384 54.4
Phvul.009G076800 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 1.9e-71 273.9 390 52.8
Lalb_Chr22g0356061 Lupinus albus HOM05D001443 ORTHO05D001352 1.7e-69 267.3 371 52.0
Nitab4.5_0001584g0060 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.7e-69 267.3 405 53.8
Nitab4.5_0001179g0110 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.3e-69 266.9 397 53.9
Medtr3g104280 Medicago truncatula HOM05D001443 ORTHO05D001352 6.6e-69 265.4 378 49.2
Oeu029405.1 Olea europaea HOM05D001443 ORTHO05D001352 8.6e-69 265.0 380 53.2
PGSC0003DMG400029301 Solanum tuberosum HOM05D001443 ORTHO05D001352 9.6e-68 261.5 391 55.2
FAN20G1898 Fragaria x ananassa HOM05D001443 ORTHO05D001352 2.8e-67 260.0 396 51.3
FAN27G1512 Fragaria x ananassa HOM05D001443 ORTHO05D001352 8.1e-67 258.5 396 52.5
Cc08_g10400 Coffea canephora HOM05D001443 ORTHO05D001352 8.9e-66 255.0 394 50.8
Psat0ss1279g0040 Pisum sativum HOM05D001443 ORTHO05D001352 1.5e-65 254.2 378 48.7
MBI04_g37934_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 7.6e-65 251.9 430 46.3
Actinidia18193 Actinidia chinensis HOM05D001443 ORTHO05D001352 1.7e-64 250.8 382 53.1
FvH4_2g32110 Fragaria vesca HOM05D001443 ORTHO05D001352 8.4e-64 248.4 388 50.5
FAN24G0735 Fragaria x ananassa HOM05D002015 ORTHO05D001352 8.4e-64 248.4 388 50.5
Glyma.17G230300 Glycine max HOM05D001443 ORTHO05D001352 1.1e-63 248.1 400 51.8
Lj7C280G0 Lonicera japonica HOM05D001443 ORTHO05D001352 1.4e-63 247.7 392 56.1
Lalb_Chr14g0367811 Lupinus albus HOM05D001443 ORTHO05D001352 4.2e-63 246.1 369 49.3
VMungo1309G2260 Vigna mungo HOM05D001443 ORTHO05D001352 4.2e-63 246.1 387 52.7
ClCG08G016950 Citrullus lanatus HOM05D001443 ORTHO05D001352 1.2e-62 244.6 392 50.8
PGSC0003DMG400002210 Solanum tuberosum HOM05D001443 ORTHO05D001352 1.2e-62 244.6 387 52.5
CSS0045360 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.0e-61 241.5 395 48.9
Sopen12g031850 Solanum pennellii HOM05D001443 ORTHO05D001352 2.3e-61 240.4 391 52.9
Cfa017941 Carpinus fangiana HOM05D001443 ORTHO05D001352 3.0e-61 240.0 401 49.6
MD08G1044200 Malus domestica HOM05D001443 ORTHO05D001352 2.5e-60 236.9 391 54.0
CAN.G208.76 Capsicum annuum HOM05D001443 ORTHO05D001352 3.1e-58 229.9 382 52.4
Lj5g0018193 Lotus japonicus HOM05D001443 ORTHO05D001352 5.3e-58 229.2 379 50.1
TAR383G0280 Trochodendron aralioides HOM05D001443 ORTHO05D001352 2.6e-57 226.9 413 48.7
FAN15G3039 Fragaria x ananassa HOM05D001443 ORTHO05D001352 5.8e-57 225.7 394 48.5
Solyc12g095960.3 Solanum lycopersicum HOM05D001443 ORTHO05D001352 5.8e-57 225.7 382 51.8
Dinv23429 Davidia involucrata HOM05D001443 ORTHO05D001352 2.2e-56 223.8 383 50.7
Haze_18206 Corylus avellana HOM05D001443 ORTHO05D001352 3.8e-56 223.0 399 48.9
Manes.16G078600 Manihot esculenta HOM05D001443 ORTHO05D001352 1.1e-55 221.5 391 47.8
Lalb_Chr24g0399601 Lupinus albus HOM05D001443 ORTHO05D001352 9.3e-55 218.4 371 48.0
QL11p052292 Quercus lobata HOM05D001443 ORTHO05D001352 1.6e-54 217.6 328 53.7
Phvul.009G076600 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 4.6e-54 216.1 386 46.4
Psat6g019480 Pisum sativum HOM05D001443 ORTHO05D001352 4.6e-54 216.1 381 52.5
arahy.Tifrunner.gnm1.ann1.1JP5NC Arachis hypogaea HOM05D001443 ORTHO05D001352 7.9e-54 215.3 386 47.2
arahy.Tifrunner.gnm1.ann1.WC628Y Arachis hypogaea HOM05D001443 ORTHO05D001352 1.0e-53 214.9 386 47.2
Eucgr.C03020 Eucalyptus grandis HOM05D001443 ORTHO05D001352 3.9e-53 213.0 384 47.9
DCAR_003086 Daucus carota HOM05D001443 ORTHO05D001352 6.7e-53 212.2 391 43.7
TAR626G0821 Trochodendron aralioides HOM05D001229 ORTHO05D001352 5.6e-52 209.1 437 47.6
Hma1.2p1_0482F.1_g162680 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 9.6e-52 208.4 372 46.8
DCAR_004440 Daucus carota HOM05D001443 ORTHO05D001352 2.8e-51 206.8 379 47.5
Hma1.2p1_1944F.1_g308600 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 4.8e-51 206.1 372 46.5
Medtr3g104270 Medicago truncatula HOM05D001443 ORTHO05D001352 1.8e-50 204.1 403 40.9
Nitab4.5_0009587g0010 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.8e-50 204.1 389 48.8
Oeu036343.1 Olea europaea HOM05D001443 ORTHO05D001352 1.8e-50 204.1 371 46.9
arahy.Tifrunner.gnm1.ann1.7QGM13 Arachis hypogaea HOM05D001443 ORTHO05D001352 2.4e-50 203.8 374 47.3
Medtr1g016760 Medicago truncatula HOM05D001443 ORTHO05D001352 6.9e-50 202.2 381 51.4
Nitab4.5_0000738g0120 Nicotiana tabacum HOM05D001443 ORTHO05D001352 5.8e-49 199.1 383 53.0
Nn8g38919 Nelumbo nucifera HOM05D001443 ORTHO05D001352 1.7e-48 197.6 431 48.3
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.1e-47 194.9 335 50.7
CANSAT25G0392 Cannabis sativa HOM05D001443 ORTHO05D001352 4.6e-46 189.5 278 51.4
CSS0000793 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 7.9e-46 188.7 398 45.5
Glyma.06G051200 Glycine max HOM05D001443 ORTHO05D001352 3.0e-45 186.8 373 45.0
MBI01_g02268_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 1.5e-44 184.5 446 41.3
Rhsim11G0045600 Rhododendron simsii HOM05D001443 ORTHO05D001352 7.4e-44 182.2 401 40.6
vmacro00155 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 2.8e-43 180.3 395 42.3
Oeu018652.2 Olea europaea HOM05D001443 ORTHO05D001352 3.1e-42 176.8 394 41.6
Migut.E01558 Erythranthe guttata HOM05D001443 ORTHO05D001352 4.0e-42 176.4 397 42.8
Glyma.04G050500 Glycine max HOM05D001443 ORTHO05D001352 5.3e-42 176.0 284 48.6
CSS0022594 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.2e-41 174.9 398 40.7
Atru.chr7.1037 Acer truncatum HOM05D001443 ORTHO05D001352 2.0e-41 174.1 384 45.1
Oeu037328.1 Olea europaea HOM05D001443 ORTHO05D001352 2.9e-40 170.2 381 41.7
TPR.G3592 Trifolium pratense HOM05D001443 ORTHO05D001352 2.9e-40 170.2 380 40.8
Thhalv10001945m.g Eutrema salsugineum HOM05D001443 ORTHO05D001352 4.9e-40 169.5 376 43.4
Lj1g0011088 Lotus japonicus HOM05D001443 ORTHO05D001352 2.1e-38 164.1 387 42.4
Ca_15868_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 2.3e-37 160.6 381 41.7
CDE07G0803 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 7.4e-36 155.6 390 42.1
EL10Ac2g03917 Beta vulgaris HOM05D001443 ORTHO05D001352 2.8e-35 153.7 388 47.7
TAR624G1164 Trochodendron aralioides HOM05D001443 ORTHO05D001352 8.2e-35 152.1 391 39.4
Lj8C550G1 Lonicera japonica HOM05D001443 ORTHO05D001352 2.4e-34 150.6 383 42.6
Aqoxy4G00509 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 4.1e-34 149.8 391 46.3
Aqoxy7G01266 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 2.0e-33 147.5 429 35.4
PGR044G0673 Punica granatum HOM05D001443 ORTHO05D001352 4.5e-33 146.4 381 43.6
ECA233G0783 Erigeron canadensis HOM05D001443 ORTHO05D001352 7.6e-33 145.6 382 41.9
Aa31LG5G9730 Aethionema arabicum HOM05D001443 ORTHO05D001352 1.0e-32 145.2 332 48.2
PSO063G2194 Papaver somniferum HOM05D001443 ORTHO05D001352 1.7e-32 144.4 402 44.0
TAR624G0653 Trochodendron aralioides HOM05D001033 ORTHO05D002045 3.8e-32 143.3 391 38.6
Sed0027567 Sechium edule HOM05D001443 ORTHO05D001352 2.5e-31 140.6 391 40.9
Sopen08g019330 Solanum pennellii HOM05D001443 ORTHO05D001352 6.1e-30 136.0 145 65.5
PSO832G3656 Papaver somniferum HOM05D001443 ORTHO05D001352 1.8e-29 134.4 405 43.5
Os02g0224300 Oryza sativa ssp. japonica HOM05D001443 ORTHO05D001352 2.3e-29 134.0 377 39.0
AUR62022055 Chenopodium quinoa HOM05D001443 ORTHO05D001352 5.7e-28 129.4 349 38.1
Lju3103C0G13 Lonicera japonica HOM05D001443 ORTHO05D001352 7.4e-28 129.0 369 37.4
AUR62009169 Chenopodium quinoa HOM05D001443 ORTHO05D001352 1.3e-27 128.3 342 40.1
GSVIVG01035354001 Vitis vinifera HOM05D001443 ORTHO05D001352 1.6e-27 127.9 196 48.0
CDE06G2332 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 4.8e-27 126.3 393 38.4
Migut.A00146 Erythranthe guttata HOM05D001443 ORTHO05D001352 6.3e-27 125.9 383 38.1
Ca_13179_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 8.2e-27 125.6 397 37.8
Sp4g05870 Schrenkiella parvula HOM05D001443 ORTHO05D001352 1.4e-26 124.8 293 41.0
Actinidia14705 Actinidia chinensis HOM05D001443 ORTHO05D001352 4.1e-26 123.2 119 67.2
THA.LOC104818574 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 3.4e-25 120.2 380 44.7
THA.LOC104804517 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 4.5e-25 119.8 357 45.7
unitig_749.g13825 Utricularia gibba HOM05D001443 ORTHO05D001352 1.0e-24 118.6 135 59.3
TPR.G13013 Trifolium pratense HOM05D001443 ORTHO05D001352 1.1e-23 115.2 285 38.9
HPP92_002838 Vanilla planifolia HOM05D001443 ORTHO05D001352 4.2e-23 113.2 390 37.9
Zm00001eb205070 Zea mays HOM05D001443 ORTHO05D001352 7.2e-23 112.5 194 45.4
ECA240G2406 Erigeron canadensis HOM05D001443 ORTHO05D001352 4.6e-22 109.8 386 37.3
Solyc08g065630.3 Solanum lycopersicum HOM05D002015 ORTHO05D001352 2.2e-19 100.9 278 43.5
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 2.8e-19 100.5 320 43.4
PSO210G5804 Papaver somniferum HOM05D001443 ORTHO05D001352 4.1e-18 96.7 406 35.2
Sc09g0009730 Simmondsia chinensis HOM05D001443 ORTHO05D001352 4.1e-18 96.7 218 41.3
Ah.10g034480 Amaranthus hybridus HOM05D001443 ORTHO05D001352 3.8e-16 90.1 390 36.9
A04p20190 Brassica napus HOM05D001443 ORTHO05D001352 7.9e-14 82.4 378 33.6
BraA04t17598Z Brassica rapa HOM05D001443 ORTHO05D001352 7.9e-14 82.4 378 33.6
Carub.0004s0582 Capsella rubella HOM05D001443 ORTHO05D001352 1.4e-13 81.6 385 36.4
BcaB06g29611 Brassica carinata HOM05D001443 ORTHO05D001352 2.3e-13 80.9 378 34.9
CARHR287340 Cardamine hirsuta HOM05D001443 ORTHO05D001352 2.0e-12 77.8 295 32.9
Lj9A698G56 Lonicera japonica HOM05D001443 ORTHO05D001352 1.3e-11 75.1 366 34.2
AL4G18040 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 1.8e-10 71.2 384 34.9
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 1.8e-10 71.2 247 34.4
SGA_v2.0_scaffold88G27221 Striga asiatica HOM05D001443 ORTHO05D001352 4.1e-10 70.1 362 32.0
BcaC02g08312 Brassica carinata HOM05D001443 ORTHO05D001352 2.0e-09 67.8 379 32.2
BolC4t27123H Brassica oleracea HOM05D001443 ORTHO05D001352 2.0e-09 67.8 379 32.2
C04p55900 Brassica napus HOM05D001443 ORTHO05D001352 2.6e-09 67.4 380 32.6
TAR628G0559 Trochodendron aralioides HOM05D001443 ORTHO05D001352 1.3e-08 65.1 192 37.5
AT2G25970 Arabidopsis thaliana HOM05D001443 ORTHO05D001352 2.9e-08 63.9 381 34.1
SGA_v2.0_scaffold187G40246 Striga asiatica HOM05D001443 ORTHO05D001352 3.8e-08 63.5 324 32.1
Dinv11676 Davidia involucrata HOM05D001443 ORTHO05D001352 4.2e-07 60.1 47 63.8
Lsat_1_v5_gn_6_13221 Lactuca sativa HOM05D001443 ORTHO05D001352 4.2e-07 60.1 382 36.6
QL11p052357 Quercus lobata HOM05D001443 ORTHO05D001352 3.6e-06 57.0 172 33.7


User provided reference genes

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