Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.3e-194 682.9 355 100.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 4.5e-176 621.3 349 92.8
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.6e-171 605.5 357 90.5
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.1e-169 600.1 357 90.2
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.1e-169 598.2 357 89.4
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 9.2e-161 570.5 348 83.3
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.6e-160 569.7 357 86.0
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.7e-159 566.2 355 81.4
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 5.1e-159 564.7 352 81.5
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.5e-158 562.4 354 82.8
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 6.2e-157 557.8 355 81.7
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.8e-156 556.2 355 80.8
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.3e-156 555.8 353 80.7
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 4.0e-156 555.1 355 81.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 5.8e-155 551.2 351 80.3
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.7e-154 549.7 351 80.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.9e-154 548.9 335 82.7
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.7e-154 548.5 367 78.7
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 3.7e-154 548.5 353 79.6
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 6.4e-154 547.7 315 88.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 8.3e-154 547.4 335 83.0
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.4e-153 546.6 335 83.3
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 4.1e-153 545.0 335 83.6
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 4.1e-153 545.0 349 82.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 5.4e-153 544.7 335 81.8
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 7.1e-153 544.3 351 80.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 7.1e-153 544.3 352 79.8
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 7.1e-153 544.3 335 81.5
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.1e-152 542.7 344 80.5
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 7.8e-152 540.8 328 85.7
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.0e-151 540.4 346 78.6
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.3e-151 540.0 330 83.6
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 3.9e-151 538.5 353 79.9
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.6e-151 537.3 342 81.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.5e-150 536.6 347 79.8
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.5e-150 536.6 350 79.1
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.5e-150 535.8 349 78.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.5e-150 535.8 346 79.5
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 3.3e-150 535.4 347 79.0
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 5.6e-150 534.6 304 91.8
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 7.3e-150 534.3 409 70.2
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 7.3e-150 534.3 347 79.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.5e-150 533.9 342 80.4
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-149 533.5 353 79.0
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.8e-149 532.3 337 80.7
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.8e-149 532.3 348 78.7
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.8e-149 532.3 339 80.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.6e-149 531.9 329 82.4
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.6e-149 531.9 369 74.8
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 6.2e-149 531.2 325 83.4
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.4e-148 530.0 351 78.1
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.4e-148 530.0 354 77.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.4e-148 530.0 350 77.1
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 3.1e-148 528.9 355 76.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.1e-148 528.9 338 80.2
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 5.2e-148 528.1 354 76.8
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.5e-147 526.6 349 78.2
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-147 526.2 350 78.3
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.0e-147 526.2 350 78.3
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.8e-147 524.6 358 76.3
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.8e-147 524.6 360 76.1
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 5.8e-147 524.6 352 76.4
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 7.6e-147 524.2 351 76.9
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 7.6e-147 524.2 348 78.2
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.9e-147 523.9 351 77.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 9.9e-147 523.9 336 80.1
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.7e-146 523.1 350 77.7
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.9e-146 521.5 350 77.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.4e-146 520.8 317 82.6
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 3.2e-145 518.8 336 78.3
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 5.4e-145 518.1 318 82.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.1e-144 516.2 335 79.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.6e-144 515.0 351 74.6
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.7e-143 513.1 315 82.5
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.3e-143 512.7 322 82.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.1e-143 511.5 311 83.6
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.1e-140 502.3 311 82.3
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.6e-139 499.2 314 79.9
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.8e-138 495.4 341 73.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 4.9e-138 495.0 314 82.2
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.9e-138 495.0 323 76.5
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.6e-136 488.4 364 72.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.6e-133 478.8 355 72.4
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.4e-132 476.1 309 79.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 3.1e-132 475.7 349 69.1
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.5e-131 473.4 336 75.0
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.0e-131 473.0 287 84.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 4.5e-131 471.9 330 76.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 7.6e-131 471.1 305 78.4
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-130 470.3 350 73.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.3e-129 464.2 405 64.2
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.3e-126 455.3 315 76.5
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 4.8e-125 451.8 313 72.5
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.8e-122 442.2 353 68.8
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.2e-121 438.7 282 78.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 9.3e-121 437.6 323 72.1
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-117 427.2 335 67.2
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 3.1e-116 422.5 344 66.0
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.2e-115 420.6 325 67.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.2e-113 412.5 301 69.8
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.3e-109 400.6 242 85.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.2e-109 399.8 355 62.3
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.4e-105 387.1 255 75.3
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.9e-98 362.8 217 81.6
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 5.5e-97 358.6 221 81.0
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 4.4e-86 322.4 303 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-83 314.3 230 69.6
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.6e-80 303.9 312 56.4
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 3.6e-80 302.8 192 81.2
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 4.7e-80 302.4 303 55.1
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.3e-79 300.1 187 82.4
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.4e-76 290.8 220 69.1
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.9e-73 280.4 236 62.7
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 3.4e-70 269.6 167 84.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.5e-65 251.5 335 46.6
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.2e-60 236.5 151 77.5
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.0e-58 231.5 286 48.6
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.2e-54 218.0 186 64.0
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.6e-48 197.6 161 65.8
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.9e-45 186.0 243 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.9e-41 174.1 150 59.3
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 4.0e-39 166.4 117 69.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.3e-37 161.4 265 41.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.9e-37 159.5 280 35.4
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.4e-36 157.1 110 68.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.7e-35 153.7 80 93.8
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 3.5e-35 153.3 262 39.7
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 1.6e-32 144.4 140 61.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.1e-28 131.7 101 71.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 6.6e-26 122.5 81 79.0
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.8e-23 114.4 74 71.6
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.9e-22 108.6 54 96.3
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.4e-21 105.9 109 54.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 9.3e-20 102.1 113 52.2
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.0e-18 97.1 59 86.4
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.1e-18 96.3 88 62.5
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.3e-17 93.6 60 81.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.6e-16 90.1 62 69.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 7.6e-14 82.4 55 69.1
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.9e-12 77.8 43 83.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.6e-08 64.7 58 56.9
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 1.5e-06 58.2 34 79.4
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.0e-05 55.5 60 48.3


User provided reference genes

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