Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.4e-40 169.1 81 100.0
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.8e-33 144.8 81 80.2
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.8e-33 144.8 81 81.5
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 2.8e-33 144.8 81 81.5
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 8.3e-33 143.3 81 80.2
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 76.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 7.8e-31 136.7 81 74.1
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 75.3
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 75.3
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 72.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 75.3
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 8.6e-30 133.3 81 71.6
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 8.6e-30 133.3 81 72.8
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 1.9e-29 132.1 81 74.1
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 72.8
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 71.6
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 3.3e-29 131.3 81 71.6
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 4.3e-29 131.0 81 71.6
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 70.4
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 71.6
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.6e-28 129.0 81 70.4
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.6e-28 129.0 81 67.9
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 69.1
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 3.6e-28 127.9 81 70.4
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 69.1
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 71.6
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.8e-27 125.6 80 71.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.8e-27 125.6 82 72.0
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 65.4
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 69.1
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 70.4
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 70.4
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 70.4
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 71.6
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 3.0e-27 124.8 80 68.8
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 4.0e-27 124.4 80 68.8
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 71.6
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 67.9
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 64.2
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 69.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 69.1
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 69.1
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 66.7
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 65.4
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 65.4
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 66.7
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.3e-25 119.4 82 68.3
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 64.2
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 65.4
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 64.2
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 67.9
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 67.9
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 67.9
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 67.9
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 8.3e-25 116.7 78 65.4
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 66.7
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 64.2
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 63.0
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 64.2
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 64.2
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 64.2
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 64.2
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 67.9
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 64.2
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.2e-24 114.8 77 71.4
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 5.4e-24 114.0 82 65.9
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 63.0
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 60.5
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 61.7
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 63.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 63.0
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 2.7e-23 111.7 81 63.0
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 61.7
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 61.7
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 61.7
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 3.5e-23 111.3 81 61.7
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.5e-23 111.3 77 70.1
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 58.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 58.0
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 58.0
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 3.9e-22 107.8 81 63.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 60.5
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 60.5
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 8.6e-22 106.7 78 59.0
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.9e-21 105.5 80 53.8
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 8.0e-20 100.1 76 60.5
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.8e-19 99.0 59 74.6
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 51.9
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 5.8e-18 94.0 72 58.3
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 6.4e-17 90.5 61 65.6
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 2.0e-15 85.5 78 52.6
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.6e-15 84.3 74 58.1
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 6.0e-15 84.0 59 62.7
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 6.0e-15 84.0 57 63.2
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.3e-14 82.8 57 61.4
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 2.3e-14 82.0 59 61.0
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.8e-12 75.1 77 53.2
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.6e-12 74.7 80 43.8
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.4e-11 72.8 43 74.4
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.4e-11 72.8 43 74.4
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 6.8e-11 70.5 80 42.5
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 7.5e-10 67.0 40 70.0
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.4e-08 62.8 45 51.1
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 1.6e-07 59.3 53 54.7
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 4.6e-07 57.8 45 53.3


User provided reference genes

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