Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.0e-293 1012.7 504 100.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 9.7e-265 916.4 504 89.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.8e-255 885.6 504 85.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 4.1e-255 884.4 505 87.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 7.0e-255 883.6 503 85.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.9e-254 880.6 504 84.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.0e-229 798.5 509 76.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.4e-226 789.6 504 78.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 6.4e-224 780.8 514 75.7
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.1e-219 765.8 509 73.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 6.2e-219 764.2 506 73.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.4e-218 763.1 509 72.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 7.5e-217 757.3 511 73.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.8e-214 747.3 509 72.1
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.3e-213 746.5 512 71.7
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.3e-213 745.7 515 72.8
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 6.6e-213 744.2 510 72.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 9.5e-212 740.3 512 72.3
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.1e-211 739.2 594 63.8
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 6.2e-211 737.6 512 71.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.1e-210 735.3 568 66.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.2e-210 734.6 512 71.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.9e-210 733.8 512 71.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 6.4e-208 727.6 511 71.2
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 6.4e-208 727.6 512 71.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-207 726.1 520 70.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.2e-207 725.3 511 71.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 9.2e-207 723.8 508 70.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.6e-206 723.0 508 70.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.1e-206 722.6 534 68.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.7e-206 722.2 508 70.1
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.7e-206 722.2 512 69.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 6.0e-206 721.1 507 69.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-205 719.9 507 69.8
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-205 719.9 507 69.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.3e-205 719.9 510 71.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.7e-205 719.5 504 70.2
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 6.6e-205 717.6 509 69.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 8.6e-205 717.2 525 68.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.1e-204 716.8 517 68.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.6e-204 713.8 509 70.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 9.6e-204 713.8 504 69.6
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 9.6e-204 713.8 511 70.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.4e-202 709.9 509 69.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 8.9e-202 707.2 508 67.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.4e-201 704.9 512 70.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.4e-199 699.9 461 73.3
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-199 698.7 510 68.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 68.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 68.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.1e-198 696.0 514 68.9
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.5e-198 695.3 510 68.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 4.6e-198 694.9 512 68.0
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.6e-198 694.9 509 68.2
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 6.0e-198 694.5 512 66.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.3e-197 693.3 511 68.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-196 689.5 512 68.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-196 689.5 512 68.0
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 5.6e-196 688.0 509 67.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.2e-195 684.5 510 65.5
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.4e-194 683.3 509 66.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.4e-194 682.6 506 66.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.0e-194 681.8 548 64.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 6.9e-194 681.0 476 70.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.0e-193 679.5 510 65.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.0e-193 679.5 505 67.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 7.6e-193 677.6 514 66.9
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.8e-192 675.2 514 67.3
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 4.9e-192 674.9 510 66.5
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.1e-191 673.7 509 66.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.2e-191 672.2 510 66.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 4.2e-191 671.8 499 67.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 9.3e-191 670.6 505 66.7
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 9.3e-191 670.6 494 69.2
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.8e-189 666.4 511 67.3
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-189 666.4 509 65.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.1e-188 663.7 512 66.8
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.6e-187 658.7 502 64.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 5.3e-186 654.8 510 65.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.0e-185 652.9 502 63.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.5e-185 651.7 439 73.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 4.5e-185 651.7 510 64.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.6e-185 651.0 500 66.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.9e-184 649.0 505 65.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.9e-184 649.0 506 64.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.9e-184 648.3 510 65.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-183 647.1 547 62.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 520 63.7
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.1e-182 642.9 511 64.6
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.3e-181 640.2 512 64.5
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 8.7e-181 637.5 511 64.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.3e-180 635.6 507 64.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 9.0e-178 627.5 432 69.9
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 4.5e-177 625.2 483 67.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.0e-176 624.0 510 63.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.3e-176 623.6 556 60.8
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-175 620.5 437 69.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.5e-175 619.4 502 62.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.5e-175 618.2 519 59.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.0e-173 614.0 459 65.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 9.6e-172 607.4 435 68.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.6e-166 589.0 424 69.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 9.7e-164 580.9 456 62.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.8e-160 568.9 354 78.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.0e-157 559.3 507 58.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-155 553.5 371 74.1
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.4e-154 549.7 492 56.1
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-152 542.7 415 67.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 8.5e-152 541.2 379 70.2
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.2e-151 538.1 448 61.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 8.3e-131 471.5 384 63.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 9.5e-127 458.0 494 48.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-121 440.7 287 75.3
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.6e-121 440.7 460 50.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 5.9e-121 438.7 391 61.6
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-120 437.6 508 47.6
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 5.6e-119 432.2 440 51.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-115 419.9 371 59.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-107 394.4 328 63.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.3e-80 304.7 496 37.3
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 8.7e-80 302.0 678 34.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.1e-78 297.4 238 63.0
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.3e-72 277.3 461 37.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.3e-72 277.3 481 38.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.7e-67 261.2 219 60.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 4.2e-58 229.9 370 36.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 9.3e-58 228.8 501 33.7
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-56 224.6 157 72.6
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.8e-40 169.1 206 41.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-37 161.8 102 78.4
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.6e-36 157.5 250 38.8
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-33 147.1 92 78.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.3e-32 144.4 121 61.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.7e-25 120.9 347 26.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-22 112.1 106 55.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 8.3e-14 82.8 55 74.5
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 9.1e-13 79.3 48 68.8
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.9e-11 74.3 49 73.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-09 67.0 66 62.1


User provided reference genes

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