Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.1e-193 679.9 362 100.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 4.3e-174 614.8 362 89.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-165 586.6 362 86.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.8e-165 584.7 380 81.8
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.1e-164 580.5 362 84.8
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.0e-163 579.3 362 85.1
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-159 565.8 362 84.0
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.2e-157 559.3 362 81.5
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.7e-150 534.6 362 79.8
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.7e-142 508.1 354 76.3
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.4e-140 502.7 362 73.5
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 4.5e-139 498.4 363 73.6
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.8e-135 486.5 332 77.4
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.8e-135 484.6 323 78.6
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.6e-134 482.6 325 78.5
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 5.7e-134 481.5 355 71.8
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 5.7e-134 481.5 353 71.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.1e-132 477.2 355 70.4
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.5e-131 471.9 360 70.0
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.3e-130 469.5 335 72.8
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.9e-130 469.2 335 72.2
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 3.8e-130 468.8 355 71.3
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-129 467.2 337 71.5
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.5e-129 466.8 357 69.7
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 3.3e-129 465.7 335 71.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 3.3e-129 465.7 355 69.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 5.6e-129 464.9 345 69.3
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 7.3e-129 464.5 338 74.9
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 9.5e-129 464.2 342 71.6
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 8.0e-128 461.1 335 71.3
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.4e-127 460.3 349 72.8
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.2e-126 457.2 347 70.9
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.3e-125 453.8 384 65.4
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 2.2e-125 453.0 351 68.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 3.7e-125 452.2 353 68.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 6.4e-125 451.4 336 69.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 3.2e-124 449.1 337 69.7
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 4.1e-124 448.7 337 70.3
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 4.1e-124 448.7 338 71.3
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 5.4e-124 448.4 341 68.9
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.7e-123 446.0 353 67.4
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 4.6e-123 445.3 341 68.9
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.9e-123 444.9 335 70.1
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.1e-121 440.7 353 66.6
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.5e-121 440.3 335 70.7
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.5e-121 439.5 355 65.4
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 9.5e-121 437.6 342 67.3
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 9.5e-121 437.6 355 65.1
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.8e-120 436.0 339 67.8
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 6.2e-120 434.9 335 69.3
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.0e-119 434.1 336 67.3
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-119 433.7 339 67.8
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.8e-119 433.3 335 67.2
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-119 433.3 339 67.8
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 4.0e-119 432.2 336 66.7
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 4.0e-119 432.2 349 65.6
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 4.0e-119 432.2 335 67.5
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 5.2e-119 431.8 336 66.7
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 5.2e-119 431.8 362 65.2
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.5e-118 430.3 335 67.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 2.0e-118 429.9 362 64.1
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.6e-118 429.5 339 67.3
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 7.5e-118 427.9 337 67.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.9e-117 426.0 333 68.2
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 8.3e-117 424.5 354 63.3
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.4e-116 423.7 336 66.1
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.9e-116 423.3 410 57.6
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.4e-116 422.9 443 55.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 4.1e-116 422.2 338 66.6
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.4e-116 421.8 373 62.7
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 9.2e-116 421.0 363 63.4
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 9.2e-116 421.0 386 60.6
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.7e-115 419.5 297 73.7
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 2.7e-115 419.5 334 65.0
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 7.8e-115 417.9 296 73.6
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 6.6e-114 414.8 335 65.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.5e-113 412.9 356 60.4
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.2e-112 410.6 359 61.8
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.2e-112 410.6 338 65.1
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 8.1e-112 407.9 344 63.4
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.9e-111 404.4 338 62.4
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 6.4e-109 398.3 353 60.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-108 396.0 339 64.0
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.5e-107 392.5 309 68.3
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 4.6e-107 392.1 356 60.4
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.0e-107 391.7 280 71.8
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 7.8e-107 391.3 337 60.8
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 3.0e-106 389.4 353 59.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.9e-106 389.0 351 59.0
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.6e-106 388.3 226 87.6
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.1e-105 387.5 477 49.9
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.5e-105 386.3 568 45.1
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 4.3e-105 385.6 311 66.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-104 383.6 345 62.3
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.6e-104 383.6 303 66.7
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 3.6e-104 382.5 298 69.8
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.2e-103 378.6 295 68.1
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.5e-102 377.1 299 67.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 4.4e-102 375.6 333 58.9
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 9.9e-102 374.4 293 67.6
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 9.9e-102 374.4 344 59.9
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.7e-101 373.6 297 66.3
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 4.9e-101 372.1 313 64.9
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 6.0e-99 365.2 335 59.7
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.7e-98 363.6 341 57.8
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 6.9e-95 351.7 368 55.2
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.5e-94 350.5 271 67.5
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.6e-94 349.7 300 63.7
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 2.9e-93 346.3 341 56.3
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 4.2e-92 342.4 332 58.1
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 7.3e-89 331.6 409 49.1
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 8.1e-88 328.2 253 69.2
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 5.8e-86 322.0 347 51.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-82 310.1 223 78.5
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.9e-81 307.0 248 66.9
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 2.4e-79 300.1 307 55.7
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.0e-79 299.3 345 50.4
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 9.0e-79 298.1 310 56.1
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 2.6e-78 296.6 304 54.6
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.6e-78 296.6 306 55.6
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 3.0e-74 283.1 165 84.8
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.7e-74 282.0 353 48.2
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.4e-73 278.5 353 48.4
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 2.8e-64 250.0 239 59.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 3.7e-64 249.6 334 46.4
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 7.2e-60 235.3 158 72.8
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 3.1e-55 219.9 128 83.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 5.9e-54 215.7 157 72.6
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 5.5e-52 209.1 211 55.5
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.1e-51 207.2 172 62.8
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.9e-50 203.0 338 37.0
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 8.8e-50 201.8 365 36.4
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.5e-49 201.1 346 39.6
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-49 199.5 138 75.4
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 3.1e-47 193.4 319 40.8
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.2e-45 187.2 188 54.3
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 8.5e-45 185.3 114 79.8
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 8.5e-45 185.3 114 79.8
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.6e-38 164.5 296 36.8
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-35 154.5 105 74.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.5e-33 147.9 227 42.3
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 9.7e-33 145.2 272 40.4
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.3e-31 139.4 135 62.2
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.8e-26 124.4 130 56.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 5.2e-26 122.9 127 55.9
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-25 121.7 185 43.2
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 1.7e-21 107.8 105 58.1
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 4.7e-19 99.8 87 58.6
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 8.0e-19 99.0 367 30.0
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.0e-18 96.7 124 43.5
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 2.3e-10 70.9 63 58.7
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 5.2e-10 69.7 91 49.5
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 5.2e-10 69.7 91 49.5
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 6.8e-10 69.3 64 54.7
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 1.2e-09 68.6 84 47.6
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-09 68.6 64 54.7
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 1.5e-09 68.2 65 55.4
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 3.4e-09 67.0 234 26.5
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 4.4e-09 66.6 84 47.6
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 4.9e-08 63.2 55 58.2
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 4.9e-08 63.2 55 58.2
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 8.3e-08 62.4 61 59.0


User provided reference genes

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