Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 4.6e-172 607.8 314 100.0
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.8e-123 446.4 244 94.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 5.2e-123 444.9 244 94.3
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 5.2e-123 444.9 244 94.7
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.5e-122 443.4 244 94.3
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.1e-120 437.2 269 87.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 7.0e-120 434.5 246 91.5
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 2.6e-119 432.6 245 90.2
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 3.5e-119 432.2 244 91.0
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 5.9e-119 431.4 246 89.4
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 7.7e-119 431.0 246 90.7
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.7e-118 429.9 266 84.2
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 2.2e-118 429.5 256 87.1
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.2e-118 429.5 256 87.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.9e-118 429.1 246 89.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 2.9e-118 429.1 238 91.6
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.8e-118 428.7 246 88.6
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 3.8e-118 428.7 244 89.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 5.0e-118 428.3 256 86.7
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.0e-118 428.3 252 87.3
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 5.0e-118 428.3 252 87.3
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 6.5e-118 427.9 264 84.5
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 6.5e-118 427.9 244 89.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 8.5e-118 427.6 237 91.6
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 8.5e-118 427.6 244 89.8
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-117 427.2 238 90.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-117 426.8 252 86.9
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.5e-117 426.8 264 84.1
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.5e-117 426.8 244 91.0
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-117 426.4 252 87.3
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-117 426.4 252 87.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.9e-117 426.4 245 89.8
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 3.2e-117 425.6 265 83.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.2e-117 425.6 244 89.3
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.2e-117 425.6 246 87.8
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.2e-117 425.6 244 90.6
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 4.2e-117 425.2 246 88.2
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 4.2e-117 425.2 244 90.2
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 4.2e-117 425.2 238 89.5
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.2e-117 425.2 244 88.5
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 5.5e-117 424.9 246 88.2
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 7.2e-117 424.5 246 89.0
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 7.2e-117 424.5 266 82.7
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 7.2e-117 424.5 244 88.9
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 7.2e-117 424.5 244 89.8
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 9.4e-117 424.1 244 90.6
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 9.4e-117 424.1 244 90.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 9.4e-117 424.1 256 85.5
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 9.4e-117 424.1 256 85.5
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 9.4e-117 424.1 256 85.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 9.4e-117 424.1 244 88.5
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.2e-116 423.7 244 89.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.2e-116 423.7 244 89.3
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.6e-116 423.3 262 84.4
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.1e-116 422.9 252 86.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.1e-116 422.9 252 86.1
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.1e-116 422.9 244 88.9
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.1e-116 422.9 246 87.8
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.7e-116 422.5 244 88.1
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.7e-116 422.5 244 88.9
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.7e-116 422.5 244 88.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.7e-116 422.5 244 88.5
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.7e-116 422.5 246 89.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.7e-116 422.5 244 87.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 4.7e-116 421.8 246 87.4
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.7e-116 421.8 246 86.2
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.7e-116 421.8 246 86.2
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 6.1e-116 421.4 244 87.7
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.0e-115 420.6 244 87.3
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.0e-115 420.6 244 87.3
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.0e-115 420.6 246 88.2
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.4e-115 420.2 273 81.3
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.4e-115 420.2 244 87.3
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.8e-115 419.9 246 86.6
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.8e-115 419.9 244 88.1
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 3.0e-115 419.1 246 88.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 3.0e-115 419.1 261 83.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.0e-115 418.7 238 89.5
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 4.0e-115 418.7 244 86.5
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.0e-115 418.7 244 86.5
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 5.2e-115 418.3 246 86.6
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 5.2e-115 418.3 244 86.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 6.8e-115 417.9 244 86.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 6.8e-115 417.9 244 88.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.8e-115 417.5 238 89.1
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-114 417.2 244 88.1
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.2e-114 417.2 238 89.1
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-114 417.2 238 89.1
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-114 417.2 238 89.1
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-114 417.2 238 89.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.2e-114 417.2 246 86.2
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.5e-114 416.8 244 85.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.5e-114 416.8 246 85.0
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.0e-114 416.4 244 86.9
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.0e-114 416.4 244 86.5
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.4e-114 415.6 261 85.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 4.4e-114 415.2 242 86.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 4.4e-114 415.2 244 86.1
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 7.5e-114 414.5 244 86.1
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.5e-114 414.5 244 85.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 9.8e-114 414.1 246 84.6
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.8e-114 414.1 244 85.7
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.3e-113 413.7 246 83.7
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.2e-113 412.9 246 86.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 2.2e-113 412.9 246 86.6
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.7e-113 412.1 265 82.3
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 3.7e-113 412.1 246 86.6
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 6.3e-113 411.4 240 86.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 8.3e-113 411.0 246 86.2
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 8.3e-113 411.0 265 81.5
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-112 410.6 244 84.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.8e-112 409.8 244 85.7
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 3.1e-112 409.1 244 85.2
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 5.4e-112 408.3 246 85.4
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.9e-109 399.8 254 83.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.5e-109 399.4 261 81.6
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.2e-109 397.9 253 80.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.2e-108 397.1 244 83.6
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 8.0e-108 394.4 225 87.6
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.0e-107 392.5 244 82.8
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 5.7e-106 388.3 240 82.5
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.3e-105 387.1 319 68.0
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.4e-104 383.6 284 70.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.4e-104 383.6 244 81.6
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.4e-104 382.9 244 81.1
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.4e-104 382.9 311 67.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.0e-104 381.3 241 80.1
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 9.1e-104 380.9 260 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.2e-103 380.6 271 76.4
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.0e-103 379.8 244 79.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 5.9e-103 378.3 334 64.4
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.9e-102 375.9 256 80.1
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 8.6e-102 374.4 286 70.3
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.5e-101 372.9 272 71.7
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.9e-93 346.7 250 68.8
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 3.6e-92 342.4 201 84.6
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.7e-89 333.6 231 73.6
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 2.7e-87 326.2 258 69.4
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.0e-86 322.8 268 63.4
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 2.2e-81 306.6 182 86.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 8.4e-73 278.1 246 65.0
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.6e-58 228.4 135 85.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.7e-57 227.3 137 85.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 8.4e-57 224.9 137 84.7
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.8e-49 199.5 138 76.1
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 3.8e-49 199.5 138 76.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 8.4e-49 198.4 108 94.4
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-37 161.0 102 79.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.3e-37 159.8 99 80.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.3e-28 131.3 129 58.1
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 8.2e-28 128.6 78 84.6
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-26 124.8 91 72.5
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 2.0e-26 124.0 102 69.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.1e-21 108.2 72 80.6
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 9.7e-21 105.1 78 66.7
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 9.7e-21 105.1 61 88.5
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.8e-20 103.6 77 70.1
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 8.5e-17 92.0 78 57.7
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 3.2e-16 90.1 78 56.4
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.6e-15 87.8 78 56.4
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 1.0e-06 58.5 79 39.2
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 3.0e-06 57.0 78 42.3


User provided reference genes

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