Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_19973 Corchorus olitorius HOM05D004241 ORTHO05D006031 3.8e-72 274.6 129 100.0
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 3.9e-16 88.6 118 40.7
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 1.5e-15 86.7 111 42.3
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 3.3e-15 85.5 114 39.5
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 4.3e-15 85.1 115 42.6
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 4.3e-15 85.1 36 94.4
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 5.6e-15 84.7 35 97.1
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 5.6e-15 84.7 35 97.1
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 5.6e-15 84.7 35 97.1
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 5.6e-15 84.7 35 97.1
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 1.2e-14 83.6 114 40.4
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 1.2e-14 83.6 114 40.4
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 1.2e-14 83.6 115 39.1
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.2e-14 83.6 115 40.0
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.2e-14 83.6 115 40.0
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 1.2e-14 83.6 35 94.3
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 2.1e-14 82.8 114 39.5
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 2.1e-14 82.8 114 39.5
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 2.1e-14 82.8 114 40.4
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 2.1e-14 82.8 36 91.7
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 2.1e-14 82.8 36 91.7
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 2.1e-14 82.8 35 94.3
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 2.8e-14 82.4 116 40.5
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 2.8e-14 82.4 34 97.1
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 2.8e-14 82.4 118 39.0
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 2.8e-14 82.4 116 39.7
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 2.8e-14 82.4 35 91.4
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 3.6e-14 82.0 34 97.1
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 3.6e-14 82.0 36 91.7
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 4.7e-14 81.6 36 91.7
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 4.7e-14 81.6 112 39.3
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 4.7e-14 81.6 111 39.6
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 4.7e-14 81.6 111 39.6
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 4.7e-14 81.6 35 91.4
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 4.7e-14 81.6 35 94.3
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 4.7e-14 81.6 118 39.0
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 6.2e-14 81.3 34 94.1
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 6.2e-14 81.3 34 94.1
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 6.2e-14 81.3 34 94.1
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 6.2e-14 81.3 34 94.1
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 6.2e-14 81.3 34 94.1
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 6.2e-14 81.3 115 38.3
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 8.0e-14 80.9 34 91.2
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 8.0e-14 80.9 34 91.2
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 1.1e-13 80.5 34 94.1
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 1.1e-13 80.5 34 94.1
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 1.1e-13 80.5 34 94.1
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 1.4e-13 80.1 33 97.0
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 1.4e-13 80.1 114 40.4
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 1.4e-13 80.1 114 40.4
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 1.4e-13 80.1 114 40.4
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
FAN09G0084 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.4e-13 80.1 34 91.2
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 1.4e-13 80.1 33 97.0
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.4e-13 80.1 114 39.5
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 1.4e-13 80.1 33 97.0
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 1.8e-13 79.7 35 91.4
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 1.8e-13 79.7 115 40.9
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 2.3e-13 79.3 115 40.0
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 2.3e-13 79.3 34 88.2
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 2.3e-13 79.3 34 94.1
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 3.1e-13 79.0 35 91.4
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 3.1e-13 79.0 34 91.2
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 4.0e-13 78.6 34 88.2
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 5.2e-13 78.2 34 91.2
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 5.2e-13 78.2 112 39.3
Zm00001eb286140 Zea mays HOM05D004241 ORTHO05D006031 5.2e-13 78.2 34 91.2
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 6.8e-13 77.8 114 37.7
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 6.8e-13 77.8 34 91.2
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 6.8e-13 77.8 32 96.9
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 6.8e-13 77.8 34 88.2
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 8.9e-13 77.4 34 91.2
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 8.9e-13 77.4 32 93.8
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 8.9e-13 77.4 34 88.2
HPP92_013874 Vanilla planifolia HOM05D004241 ORTHO05D006031 1.2e-12 77.0 36 88.9
Prupe.4G268700 Prunus persica HOM05D004241 ORTHO05D006031 1.5e-12 76.6 36 86.1
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 1.5e-12 76.6 114 37.7
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 2.6e-12 75.9 36 80.6
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 2.6e-12 75.9 34 88.2
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 2.6e-12 75.9 34 88.2
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 3.4e-12 75.5 36 80.6
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 4.4e-12 75.1 118 37.3
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 4.4e-12 75.1 34 88.2
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 5.8e-12 74.7 44 72.7
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 9.8e-12 73.9 115 39.1
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 9.8e-12 73.9 115 39.1
arahy.Tifrunner.gnm1.ann1.DE57MX Arachis hypogaea HOM05D004241 ORTHO05D001299 1.7e-11 73.2 34 82.4
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 2.2e-11 72.8 34 82.4
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 2.2e-11 72.8 114 37.7
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 2.2e-11 72.8 34 88.2
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 2.2e-11 72.8 33 87.9
arahy.Tifrunner.gnm1.ann1.12W07B Arachis hypogaea HOM05D004241 ORTHO05D001299 3.7e-11 72.0 34 82.4
arahy.Tifrunner.gnm1.ann1.ZW8CA6 Arachis hypogaea HOM05D004241 ORTHO05D006031 6.4e-11 71.2 34 85.3
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 6.4e-11 71.2 112 35.7
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 4.1e-10 68.6 35 74.3
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 9.2e-10 67.4 34 76.5
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 1.2e-09 67.0 33 78.8
Rhsim04G0126400 Rhododendron simsii HOM05D004241 ORTHO05D006031 2.7e-09 65.9 30 86.7
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 7.8e-09 64.3 31 83.9
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 7.8e-09 64.3 29 89.7
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 2.3e-08 62.8 33 75.8
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 2.3e-08 62.8 33 75.8
arahy.Tifrunner.gnm1.ann1.I63G1M Arachis hypogaea HOM05D004241 ORTHO05D006031 5.0e-08 61.6 30 86.7


User provided reference genes

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