Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_19867 Corchorus olitorius HOM05D001750 ORTHO05D001825 1.6e-46 189.1 96 100.0
Ah.02g118860 Amaranthus hybridus HOM05D001750 ORTHO05D001825 1.9e-28 129.0 87 80.5
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 2.0e-25 119.0 171 46.8
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 5.8e-25 117.5 171 46.2
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.8e-25 116.7 91 74.7
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 5.4e-23 110.9 171 44.4
Lj2A1235G104 Lonicera japonica HOM05D001750 ORTHO05D001825 2.3e-21 105.5 132 50.8
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 9.5e-20 100.1 169 43.8
PGSC0003DMG400029023 Solanum tuberosum HOM05D001750 ORTHO05D001825 9.5e-20 100.1 171 42.1
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 9.5e-20 100.1 161 43.5
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.2e-19 99.8 161 44.1
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-19 98.6 161 42.9
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 4.7e-19 97.8 161 42.9
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 4.7e-19 97.8 161 42.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 4.7e-19 97.8 161 42.9
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 4.7e-19 97.8 161 42.9
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 4.7e-19 97.8 161 42.2
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 6.2e-19 97.4 163 41.7
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 8.1e-19 97.1 154 46.1
Actinidia34923 Actinidia chinensis HOM05D001750 ORTHO05D001825 1.1e-18 96.7 49 98.0
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.4e-18 96.3 161 42.2
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.4e-18 96.3 161 42.2
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.4e-18 96.3 161 42.2
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.4e-18 96.3 161 42.2
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.4e-18 96.3 161 42.2
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.8e-18 95.9 162 42.0
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 3.1e-18 95.1 49 95.9
Lsat_1_v5_gn_4_66441 Lactuca sativa HOM05D001750 ORTHO05D001825 3.1e-18 95.1 49 95.9
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 3.1e-18 95.1 49 95.9
Sopen00g005750 Solanum pennellii HOM05D001750 ORTHO05D001825 3.1e-18 95.1 49 95.9
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-18 94.7 161 41.6
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-18 94.7 161 41.6
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 4.0e-18 94.7 161 41.6
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 4.0e-18 94.7 161 41.6
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 4.0e-18 94.7 161 41.6
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 6.8e-18 94.0 161 41.6
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.2e-17 93.2 49 93.9
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.5e-17 92.8 49 93.9
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 2.0e-17 92.4 161 41.0
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.9e-17 90.1 161 41.0
Nitab4.5_0000820g0020 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-16 89.7 49 91.8
Nitab4.5_0001152g0250 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-16 89.7 49 87.8
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.2e-16 89.0 161 41.0
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.9e-16 88.6 49 85.7
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 2.4e-15 85.5 161 39.8
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 4.1e-15 84.7 48 87.5
ClCG09G014580 Citrullus lanatus HOM05D001750 ORTHO05D001825 1.6e-14 82.8 49 83.7
ClCG09G014590 Citrullus lanatus HOM05D001750 ORTHO05D001825 1.6e-14 82.8 49 83.7
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.3e-13 79.0 49 81.6
SHI09894 Sapria himalayana HOM05D001750 ORTHO05D001825 7.3e-12 73.9 47 78.7
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 9.6e-12 73.6 45 77.8
Peaxi162Scf00111g00125 Petunia axillaris HOM05D000478 ORTHO05D000345 1.6e-11 72.8 49 79.6
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.1e-11 72.4 48 75.0
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 2.8e-11 72.0 46 73.9
Psat7g150640 Pisum sativum HOM05D001750 ORTHO05D001825 5.2e-10 67.8 34 91.2
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 2.0e-09 65.9 44 68.2
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.0e-09 65.9 44 68.2
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 2.0e-09 65.9 44 68.2
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 2.0e-09 65.9 44 68.2
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.0e-09 65.9 44 68.2
QL06p024879 Quercus lobata HOM05D001750 ORTHO05D001825 4.4e-09 64.7 146 34.2
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 5.8e-09 64.3 44 68.2
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 5.8e-09 64.3 44 68.2
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 5.8e-09 64.3 46 71.7
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 5.8e-09 64.3 44 68.2
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 65.9
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.6e-09 63.9 44 68.2
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-09 63.5 44 65.9
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.9e-09 63.5 44 68.2
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.9e-09 63.5 44 68.2
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 9.9e-09 63.5 44 68.2
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-08 63.2 44 68.2
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-08 63.2 44 68.2
Medtr8g059760 Medicago truncatula HOM05D001750 ORTHO05D011738 1.3e-08 63.2 47 63.8
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-08 63.2 48 62.5
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 1.3e-08 63.2 44 68.2
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 68.2
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 1.7e-08 62.8 44 65.9
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 68.2
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 68.2
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 68.2
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 68.2
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 48 62.5
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 65.9
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 2.2e-08 62.4 44 68.2
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 62.0 44 63.6
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 3.8e-08 61.6 44 65.9
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 4.9e-08 61.2 44 65.9
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 6.4e-08 60.8 42 69.0
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-08 60.8 44 65.9
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 8.4e-08 60.5 44 63.6
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.4e-08 60.5 44 65.9
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 8.4e-08 60.5 44 65.9
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 8.4e-08 60.5 44 63.6
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 8.4e-08 60.5 44 63.6
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-07 60.1 44 65.9
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 1.1e-07 60.1 44 61.4
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 1.1e-07 60.1 44 63.6
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 1.4e-07 59.7 28 96.4
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 1.9e-07 59.3 43 65.1
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 1.9e-07 59.3 43 65.1
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 4.2e-07 58.2 36 72.2
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 4.2e-07 58.2 45 64.4
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 5.4e-07 57.8 44 59.1
Mapoly0015s0004 Marchantia polymorpha HOM05D001750 ORTHO05D001825 9.3e-07 57.0 36 75.0
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 1.2e-06 56.6 45 66.7
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-06 56.6 38 63.2
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 2.1e-06 55.8 139 32.4
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 2.7e-06 55.5 43 62.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.7e-06 55.5 36 69.4
ClCG09G011520 Citrullus lanatus HOM05D001750 ORTHO05D001825 2.7e-06 55.5 33 75.8
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 2.7e-06 55.5 34 70.6
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.5e-06 55.1 40 62.5
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 3.5e-06 55.1 34 70.6
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 6.0e-06 54.3 47 59.6
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.0e-06 54.3 44 61.4
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.0e-06 54.3 45 60.0
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.8e-06 53.9 26 92.3
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 7.8e-06 53.9 32 75.0
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 7.8e-06 53.9 32 75.0
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 7.8e-06 53.9 32 75.0
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.8e-06 53.9 34 67.6


User provided reference genes

Program Settings