Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 2.8e-21 104.4 53 100.0
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.1e-13 78.2 43 83.7
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.8e-13 77.8 43 86.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.8e-13 77.0 43 81.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.4e-12 74.7 43 79.1
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.5e-11 72.0 43 76.7
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 3.4e-11 70.9 47 70.2
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 9.9e-11 69.3 43 76.7
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 4.9e-10 67.0 43 72.1
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-09 65.9 43 69.8
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-09 65.9 43 69.8
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 2.4e-09 64.7 43 65.1
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 5.5e-09 63.5 43 74.4
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-08 62.4 43 67.4
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-08 62.4 43 67.4
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.2e-08 62.4 43 67.4
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.2e-08 62.4 37 75.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.1e-08 61.6 47 66.0
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.1e-08 61.6 43 67.4
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.5e-08 60.8 42 66.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 3.5e-08 60.8 43 67.4
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 7.9e-08 59.7 46 65.2
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 7.9e-08 59.7 35 77.1
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.3e-07 58.9 42 66.7
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.8e-07 58.5 39 66.7
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.8e-07 58.5 43 67.4
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.8e-07 58.5 42 69.0
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 2.3e-07 58.2 47 61.7
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 3.0e-07 57.8 43 65.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.0e-07 57.8 35 74.3
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.0e-07 57.8 42 64.3
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 3.9e-07 57.4 44 63.6
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.9e-07 57.4 39 71.8
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.1e-07 57.0 44 63.6
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-07 57.0 44 63.6
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 5.1e-07 57.0 44 63.6
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 6.7e-07 56.6 45 62.2
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 8.7e-07 56.2 41 63.4
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 8.7e-07 56.2 42 64.3
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.5e-06 55.5 37 70.3
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.5e-06 55.5 42 61.9
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.9e-06 55.1 43 60.5
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.9e-06 55.1 40 62.5
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.9e-06 55.1 48 56.2
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 1.9e-06 55.1 47 63.8
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.5e-06 54.7 44 61.4
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 3.3e-06 54.3 38 65.8
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 3.3e-06 54.3 44 63.6
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 4.3e-06 53.9 39 64.1
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 4.3e-06 53.9 41 63.4
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 4.3e-06 53.9 43 67.4
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 4.3e-06 53.9 43 67.4
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 7.4e-06 53.1 45 57.8
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 7.4e-06 53.1 43 58.1
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 9.6e-06 52.8 43 60.5


User provided reference genes

Program Settings