Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.6e-64 247.7 120 100.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.5e-56 221.5 163 71.2
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.1e-54 216.5 109 93.6
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.5e-54 215.3 109 92.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 2.5e-54 215.3 109 92.7
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.3e-54 214.9 109 92.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 7.4e-54 213.8 109 92.7
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.3e-53 213.0 108 92.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.4e-52 209.5 109 89.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 2.4e-52 208.8 110 88.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 3.1e-52 208.4 115 84.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.9e-52 207.2 109 86.2
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 6.9e-52 207.2 109 89.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-51 206.5 109 89.0
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.2e-51 206.5 115 84.3
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.2e-51 206.5 115 84.3
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.5e-51 206.1 109 88.1
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.6e-51 205.3 109 88.1
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.6e-51 205.3 162 65.4
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.5e-51 204.5 109 88.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.9e-51 204.1 109 85.3
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 5.9e-51 204.1 108 88.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 7.7e-51 203.8 115 83.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.0e-50 203.4 109 86.2
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.0e-50 203.4 108 86.1
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.3e-50 203.0 163 63.8
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.3e-50 203.0 163 63.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-50 202.6 109 86.2
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.7e-50 202.6 109 84.4
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.2e-50 202.2 109 85.3
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.9e-50 201.8 163 63.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.8e-50 201.4 109 86.2
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 5.0e-50 201.1 109 84.4
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.5e-50 200.7 108 83.3
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 8.5e-50 200.3 110 81.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-49 199.5 108 82.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.9e-49 199.1 109 80.7
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.5e-49 198.7 108 85.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.2e-49 198.4 115 78.3
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.2e-49 198.4 115 78.3
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 4.2e-49 198.0 115 78.3
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 5.5e-49 197.6 115 78.3
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.5e-49 197.6 109 83.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 9.4e-49 196.8 109 80.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 9.4e-49 196.8 109 82.6
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 9.4e-49 196.8 108 83.3
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.2e-48 196.4 109 79.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.2e-48 196.4 109 83.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.2e-48 196.4 109 82.6
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.6e-48 196.1 108 85.2
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.6e-48 196.1 117 77.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-48 196.1 109 83.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.6e-48 196.1 109 83.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.1e-48 195.7 109 83.5
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.1e-48 195.7 163 62.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.1e-48 195.7 108 84.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.7e-48 195.3 105 85.7
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.6e-48 194.9 109 83.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 3.6e-48 194.9 108 82.4
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 4.6e-48 194.5 109 82.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 6.1e-48 194.1 109 82.6
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.4e-47 193.0 109 81.7
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.4e-47 193.0 109 78.9
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-47 192.2 109 81.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-47 192.2 109 81.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.3e-47 192.2 109 81.7
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.3e-47 192.2 109 81.7
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.3e-47 192.2 109 81.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.0e-47 191.8 109 79.8
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.0e-47 191.8 109 80.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.9e-47 191.4 109 78.9
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.1e-47 191.0 108 80.6
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 5.1e-47 191.0 115 77.4
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 8.8e-47 190.3 109 80.7
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 8.8e-47 190.3 109 80.7
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.0e-46 189.1 109 79.8
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 2.0e-46 189.1 109 79.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.0e-46 189.1 115 75.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 4.3e-46 188.0 109 78.9
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 4.3e-46 188.0 109 78.9
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 5.7e-46 187.6 115 75.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.7e-46 187.6 109 78.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 7.4e-46 187.2 109 78.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 7.4e-46 187.2 108 78.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.3e-45 186.4 115 74.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.2e-45 185.7 114 74.6
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 2.8e-45 185.3 115 74.8
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.7e-45 184.9 115 74.8
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 3.7e-45 184.9 109 78.0
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.8e-45 184.5 109 77.1
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 6.3e-45 184.1 109 78.0
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 6.3e-45 184.1 109 78.0
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.3e-45 184.1 109 76.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.2e-45 183.7 109 76.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.1e-44 183.3 114 73.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.4e-44 183.0 108 75.0
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 9.1e-44 180.3 109 78.9
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.0e-43 179.1 104 76.9
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.6e-43 178.7 109 77.1
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.6e-43 178.7 108 74.1
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.4e-43 178.3 115 71.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 5.9e-43 177.6 115 72.2
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.0e-42 176.8 115 72.2
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-42 176.4 104 76.0
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.9e-41 172.6 108 70.4
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.5e-41 172.2 110 74.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.2e-41 171.8 109 71.6
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.2e-41 171.4 109 71.6
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 5.5e-41 171.0 109 71.6
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 5.5e-41 171.0 102 75.5
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 7.2e-41 170.6 99 80.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 4.7e-40 167.9 109 70.6
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.0e-39 166.8 109 70.6
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.4e-39 166.4 103 72.8
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.4e-39 166.4 103 72.8
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.8e-39 166.0 108 67.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.0e-38 162.5 115 67.0
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.7e-38 161.0 105 69.5
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-36 156.8 115 65.2
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 4.7e-32 141.4 112 58.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 4.4e-30 134.8 90 70.0
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-29 132.5 108 58.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-29 132.5 108 58.3
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.6e-27 126.3 106 56.6
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 8.0e-24 114.0 67 83.6
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.0e-23 112.1 108 57.4
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.2e-23 111.3 109 54.1
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 3.1e-20 102.1 53 84.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 4.5e-19 98.2 109 48.6
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.7e-18 96.3 109 48.6
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.1e-16 87.8 108 45.4
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 6.1e-16 87.8 109 45.9
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.0e-15 85.5 92 54.3
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 5.2e-15 84.7 92 54.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 6.8e-15 84.3 110 44.5
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.0e-14 82.8 110 45.5
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.7e-13 78.6 62 61.3
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 6.3e-13 77.8 53 69.8
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.4e-12 76.6 94 47.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.8e-10 68.6 48 64.6
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 3.8e-10 68.6 48 64.6
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.6e-10 67.8 58 56.9
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 4.2e-09 65.1 29 89.7
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.4e-07 60.1 43 67.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 5.2e-07 58.2 46 58.7


User provided reference genes

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