Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.8e-34 148.7 74 100.0
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.1e-26 121.3 74 81.1
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.9e-23 112.1 73 72.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-22 109.4 73 71.2
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.6e-22 107.5 73 71.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.0e-22 107.1 73 74.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.0e-21 104.8 73 68.5
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.9e-21 104.4 73 68.5
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.5e-20 102.4 69 75.4
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.5e-20 101.7 73 68.5
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 4.3e-20 100.9 66 72.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.8e-19 98.2 73 65.8
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 4.8e-19 97.4 66 66.7
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.2e-19 97.1 73 67.1
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.2e-19 97.1 73 64.4
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.4e-18 95.9 67 68.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.4e-18 95.9 65 70.8
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-18 95.5 67 68.7
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-18 95.5 67 68.7
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.8e-18 95.5 86 58.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 6.9e-18 93.6 65 66.2
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 9.0e-18 93.2 65 69.2
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-17 92.4 74 68.9
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-17 92.4 74 68.9
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-17 92.4 74 68.9
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-17 92.4 74 68.9
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.5e-17 92.4 74 68.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.5e-17 92.4 69 63.8
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-17 92.4 64 67.2
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.0e-17 92.0 73 61.6
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.6e-17 91.7 73 63.0
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-17 91.7 74 67.6
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.4e-17 91.3 64 67.2
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.5e-17 90.9 68 64.7
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 9.9e-17 89.7 74 66.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.2e-16 88.6 74 64.9
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.9e-16 88.2 74 64.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.9e-16 88.2 64 64.1
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.9e-16 88.2 64 64.1
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-16 87.8 74 66.2
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.8e-16 87.8 74 66.2
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 3.8e-16 87.8 62 64.5
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.9e-16 87.4 74 63.5
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.9e-16 87.4 74 63.5
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.9e-16 87.4 74 63.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 6.4e-16 87.0 67 61.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 6.4e-16 87.0 65 66.2
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 8.4e-16 86.7 65 64.6
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-15 86.3 74 63.5
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-15 86.3 74 63.5
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-15 86.3 74 63.5
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-15 86.3 67 61.2
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-15 85.9 74 63.5
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.4e-15 85.9 74 63.5
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.4e-15 85.9 76 61.8
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.4e-15 85.9 69 60.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.9e-15 85.5 62 64.5
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.9e-15 85.5 74 62.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.9e-15 85.5 66 60.6
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.9e-15 85.5 66 68.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-15 85.1 86 52.3
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-15 85.1 86 52.3
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-15 85.1 86 52.3
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-15 84.7 74 62.2
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 3.2e-15 84.7 74 62.2
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 3.2e-15 84.7 67 64.2
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.2e-15 84.7 61 62.3
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.2e-15 84.7 61 62.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.2e-15 84.7 60 66.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.2e-15 84.7 60 70.0
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 4.2e-15 84.3 74 62.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.2e-15 84.3 73 63.0
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 4.2e-15 84.3 70 60.0
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 9.3e-15 83.2 65 64.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 1.3e-13 79.3 61 59.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.8e-13 79.0 67 59.7
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.8e-13 79.0 61 65.6
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-13 78.6 49 77.6
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.0e-13 78.2 64 59.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.9e-13 77.8 49 79.6
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 6.7e-13 77.0 60 60.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 6.7e-13 77.0 60 60.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 6.7e-13 77.0 67 56.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 8.7e-13 76.6 71 57.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 8.7e-13 76.6 67 55.2
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.9e-12 75.5 66 56.1
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 4.3e-12 74.3 60 63.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 7.4e-12 73.6 65 56.9
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 9.6e-12 73.2 61 62.3
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.6e-12 73.2 64 53.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.6e-11 72.4 67 58.2
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.1e-11 72.0 64 57.8
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 2.1e-11 72.0 60 61.7
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.8e-11 71.6 60 61.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.8e-11 71.6 60 58.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.7e-11 71.2 60 56.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-11 71.2 67 53.7
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 8.1e-11 70.1 60 55.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.1e-10 69.7 61 59.0
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.1e-10 69.7 60 60.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.1e-10 69.7 60 60.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-10 68.9 60 58.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-10 68.9 60 58.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.8e-10 68.9 60 58.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.8e-10 68.9 60 58.3
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.8e-10 68.9 65 49.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.4e-10 68.6 64 54.7
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.4e-10 68.6 64 54.7
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.4e-10 68.6 64 54.7
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.4e-10 68.6 68 54.4
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 5.3e-10 67.4 60 56.7
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 5.3e-10 67.4 60 56.7
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.3e-10 67.4 65 55.4
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.3e-10 67.4 59 59.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 5.3e-10 67.4 59 59.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 6.9e-10 67.0 60 56.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.9e-10 67.0 64 51.6
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 6.9e-10 67.0 62 53.2
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 9.0e-10 66.6 60 56.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.2e-09 66.2 76 53.9
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.2e-09 66.2 61 54.1
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.2e-09 66.2 60 56.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 55.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 55.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-09 65.9 60 56.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.5e-09 65.9 62 53.2
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-09 65.5 72 50.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-09 65.5 72 50.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.0e-09 65.5 72 51.4
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 56.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.0e-09 65.5 59 57.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-09 65.5 61 60.7
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-09 65.5 60 53.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.6e-09 65.1 64 51.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 2.6e-09 65.1 60 56.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.6e-09 65.1 62 58.1
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 2.6e-09 65.1 60 56.7
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 3.4e-09 64.7 59 54.2
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 5.8e-09 63.9 76 48.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 5.8e-09 63.9 76 48.7
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.8e-09 63.9 62 58.1
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 5.8e-09 63.9 64 56.2
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 5.8e-09 63.9 60 53.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.6e-09 63.5 60 51.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.0e-08 63.2 60 56.7
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.3e-08 62.8 62 53.2
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 1.3e-08 62.8 63 47.6
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.7e-08 62.4 60 56.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.7e-08 62.4 64 51.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.7e-08 62.4 60 58.3
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.2e-08 62.0 61 57.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.9e-08 61.6 76 48.7
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-08 61.6 75 46.7
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.9e-08 61.6 59 52.5
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 6.5e-08 60.5 61 54.1
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 6.5e-08 60.5 60 48.3
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.5e-08 60.5 66 48.5
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.4e-08 60.1 60 53.3
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 8.4e-08 60.1 60 50.0
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-07 59.7 46 58.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.4e-07 59.3 80 50.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.4e-07 59.3 60 51.7
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 5.5e-07 57.4 66 48.5
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.5e-07 57.4 60 50.0
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 7.1e-07 57.0 54 55.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 7.1e-07 57.0 76 43.4
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.3e-07 56.6 46 56.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 9.3e-07 56.6 60 45.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-06 56.2 66 47.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.2e-06 56.2 60 48.3
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.6e-06 55.8 60 48.3
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.5e-06 54.7 46 56.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.6e-06 54.3 60 45.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 7.9e-06 53.5 61 47.5


User provided reference genes

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