Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_18744 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.9e-25 117.5 65 100.0
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.5e-13 77.4 46 93.5
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 3.0e-09 64.7 46 73.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.9e-09 64.3 46 73.9
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.5e-08 62.4 47 70.2
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.9e-08 62.0 65 58.5
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.9e-08 62.0 65 58.5
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.5e-08 61.6 61 60.7
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.5e-08 61.6 46 71.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 4.3e-08 60.8 53 60.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 5.7e-08 60.5 48 68.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 5.7e-08 60.5 65 56.9
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.7e-08 60.5 46 69.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 7.4e-08 60.1 55 56.4
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 9.7e-08 59.7 65 53.8
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.3e-07 59.3 46 67.4
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.6e-07 58.9 65 53.8
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.2e-07 58.5 42 64.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.8e-07 58.2 42 69.0
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.8e-07 58.2 47 72.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.8e-07 58.2 43 72.1
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.8e-07 57.4 42 64.3
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 6.3e-07 57.0 42 59.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 6.3e-07 57.0 43 65.1
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.2e-07 56.6 43 67.4
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 8.2e-07 56.6 53 60.4
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 8.2e-07 56.6 59 54.2
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.1e-06 56.2 42 69.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-06 56.2 46 63.0
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.1e-06 56.2 38 76.3
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.4e-06 55.8 46 63.0
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.4e-06 55.8 53 58.5
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-06 55.8 53 58.5
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-06 55.8 53 58.5
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.8e-06 55.5 46 65.2
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.8e-06 55.5 46 65.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.8e-06 55.5 53 58.5
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.8e-06 55.5 49 55.1
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 2.4e-06 55.1 64 50.0
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.1e-06 54.7 42 71.4
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 3.1e-06 54.7 42 64.3
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-06 54.7 47 68.1
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.1e-06 54.7 47 68.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 3.1e-06 54.7 41 70.7
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 3.1e-06 54.7 38 68.4
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 5.3e-06 53.9 58 53.4
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 5.3e-06 53.9 47 66.0
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 5.3e-06 53.9 51 60.8
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 6.9e-06 53.5 43 60.5
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 6.9e-06 53.5 43 60.5
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 6.9e-06 53.5 42 57.1
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 6.9e-06 53.5 43 65.1
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 6.9e-06 53.5 52 51.9
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 9.0e-06 53.1 35 80.0


User provided reference genes

Program Settings