Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17887 Corchorus olitorius HOM05D007403 ORTHO05D009306 8.0e-285 983.0 478 100.0
Thecc.02G040500 Theobroma cacao HOM05D007403 ORTHO05D009306 4.2e-225 784.6 509 76.6
Duzib132G0321 Durio zibethinus HOM05D007403 ORTHO05D009306 1.8e-220 769.2 517 76.0
Gorai.008G041600 Gossypium raimondii HOM05D007403 ORTHO05D009306 1.0e-218 763.5 513 73.7
Gohir.D12G039900 Gossypium hirsutum HOM05D007403 ORTHO05D009306 1.3e-218 763.1 513 73.5
Dinv19355 Davidia involucrata HOM05D007403 ORTHO05D009306 5.0e-194 681.4 506 67.0
Prupe.1G562100 Prunus persica HOM05D007403 ORTHO05D009306 8.2e-189 664.1 512 63.9
TWI59G1473 Tripterygium wilfordii HOM05D007403 ORTHO05D009306 1.7e-186 656.4 516 63.0
TAR381G0205 Trochodendron aralioides HOM05D007403 ORTHO05D009306 3.8e-186 655.2 500 66.0
CSS0040815 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 9.4e-185 650.6 514 62.6
Potri.003G021100 Populus trichocarpa HOM05D007403 ORTHO05D009306 9.4e-185 650.6 509 63.9
MD08G1224800 Malus domestica HOM05D007403 ORTHO05D009306 2.7e-184 649.0 510 65.1
QL02p098561 Quercus lobata HOM05D007403 ORTHO05D009306 4.0e-183 645.2 545 60.7
GSVIVG01023003001 Vitis vinifera HOM05D007403 ORTHO05D009306 1.7e-181 639.8 497 64.6
Sabra03G0012400 Salix brachista HOM05D007403 ORTHO05D009306 3.8e-178 628.6 563 57.9
Atru.chr6.1105 Acer truncatum HOM05D007403 ORTHO05D009306 1.2e-176 623.6 496 63.5
CANSAT11G1055 Cannabis sativa HOM05D007403 ORTHO05D009306 1.3e-173 613.6 508 60.8
Manes.10G131400 Manihot esculenta HOM05D007403 ORTHO05D009306 2.0e-171 606.3 496 61.3
Ciclev10000975m.g Citrus clementina HOM05D007403 ORTHO05D009306 5.9e-171 604.7 496 62.3
TPR.G15151 Trifolium pratense HOM05D007403 ORTHO05D009306 7.2e-169 597.8 507 58.8
Cc02_g22320 Coffea canephora HOM05D007403 ORTHO05D009306 1.2e-168 597.0 510 58.2
RcHm_v2.0_Chr7g0224451 Rosa chinensis HOM05D007403 ORTHO05D009306 6.1e-168 594.7 513 59.1
CSS0033747 Camellia sinensis var. sinensis HOM05D007403 ORTHO05D009306 4.0e-167 592.0 514 58.2
AUR62024767 Chenopodium quinoa HOM05D007403 ORTHO05D009306 4.0e-167 592.0 508 57.3
Medtr2g043740 Medicago truncatula HOM05D007403 ORTHO05D009306 1.2e-166 590.5 503 58.4
Sp2g22680 Schrenkiella parvula HOM05D007403 ORTHO05D009306 2.0e-166 589.7 506 58.9
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.6e-166 589.3 538 55.8
BraA02t08979Z Brassica rapa HOM05D007403 ORTHO05D009306 5.7e-166 588.2 515 57.9
Carub.0006s2260 Capsella rubella HOM05D007403 ORTHO05D009306 5.7e-166 588.2 514 59.1
Thhalv10004004m.g Eutrema salsugineum HOM05D007403 ORTHO05D009306 1.3e-165 587.0 512 59.0
CARHR188740 Cardamine hirsuta HOM05D007403 ORTHO05D009306 2.2e-165 586.3 512 58.8
AUR62037684 Chenopodium quinoa HOM05D007403 ORTHO05D009306 2.9e-165 585.9 508 57.5
AT5G24750 Arabidopsis thaliana HOM05D007403 ORTHO05D009306 6.4e-165 584.7 512 58.8
Migut.B00669 Erythranthe guttata HOM05D007403 ORTHO05D009306 1.8e-164 583.2 505 57.6
VMungo0540G0348 Vigna mungo HOM05D007403 ORTHO05D009306 4.1e-164 582.0 536 56.0
BcaC03g17949 Brassica carinata HOM05D000219 ORTHO05D009306 9.2e-164 580.9 505 58.4
Sopen01g046850 Solanum pennellii HOM05D007403 ORTHO05D009306 1.6e-163 580.1 510 58.6
BcaB07g29919 Brassica carinata HOM05D007403 ORTHO05D009306 3.5e-163 578.9 503 58.1
BolC2t12064H Brassica oleracea HOM05D007403 ORTHO05D009306 3.5e-163 578.9 511 58.3
AL6G36340 Arabidopsis lyrata HOM05D007403 ORTHO05D009306 4.6e-163 578.6 509 58.3
Ah.12g064270 Amaranthus hybridus HOM05D007403 ORTHO05D009306 5.0e-162 575.1 511 55.6
THA.LOC104798998 Tarenaya hassleriana HOM05D007403 ORTHO05D009306 5.0e-162 575.1 507 57.6
Aqoxy5G02020 Aquilegia oxysepala HOM05D007403 ORTHO05D009306 6.6e-162 574.7 507 59.2
Lj5A250G19 Lonicera japonica HOM05D007403 ORTHO05D009306 3.3e-161 572.4 540 56.5
Glyma.08G184700 Glycine max HOM05D007403 ORTHO05D009306 4.3e-161 572.0 489 58.9
EL10Ac2g02449 Beta vulgaris HOM05D007403 ORTHO05D009306 1.2e-160 570.5 508 57.1
Psat1g137240 Pisum sativum HOM05D007403 ORTHO05D009306 4.7e-160 568.5 505 56.4
FvH4_5g30191 Fragaria vesca HOM05D007403 ORTHO05D009306 7.5e-158 561.2 512 55.3
Nitab4.5_0011920g0020 Nicotiana tabacum HOM05D007403 ORTHO05D009306 2.9e-157 559.3 485 58.1
Lalb_Chr18g0060841 Lupinus albus HOM05D007403 ORTHO05D009306 6.4e-157 558.1 476 59.0
Aa31LG11G3980 Aethionema arabicum HOM05D007403 ORTHO05D009306 1.1e-156 557.4 558 52.2
MBI04_g33335_MAGBIO Magnolia biondii HOM05D007403 ORTHO05D009306 3.2e-156 555.8 519 56.8
A02p40120 Brassica napus HOM05D000219 ORTHO05D009306 9.2e-156 554.3 488 57.2
C02p60090 Brassica napus HOM05D000219 ORTHO05D009306 1.3e-154 550.4 487 57.9
Nn5g28844 Nelumbo nucifera HOM05D007403 ORTHO05D009306 8.1e-152 541.2 421 63.7
Eucgr.G00612 Eucalyptus grandis HOM05D007403 ORTHO05D009306 1.4e-151 540.4 473 57.9
DCAR_001817 Daucus carota HOM05D007403 ORTHO05D009306 2.6e-150 536.2 489 56.2
vmacro01773 Vaccinium macrocarpon HOM05D007403 ORTHO05D009306 6.4e-149 531.6 616 48.1
SalBow5G2609 Salvia bowleyana HOM05D007403 ORTHO05D009306 7.1e-148 528.1 568 50.4
Nitab4.5_0006604g0010 Nicotiana tabacum HOM05D007403 ORTHO05D009306 1.7e-146 523.5 491 55.8
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.1e-144 516.5 529 52.2
HanXRQChr11g0338411 Helianthus annuus HOM05D007403 ORTHO05D009306 2.3e-143 513.1 384 63.3
Hma1.2p1_0557F.1_g178350 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 1.5e-142 510.4 386 65.5
Solyc01g104410.4 Solanum lycopersicum HOM05D007403 ORTHO05D009306 4.4e-142 508.8 509 53.8
Lj6g0017074 Lotus japonicus HOM05D007403 ORTHO05D009306 8.4e-141 504.6 386 61.9
CiPaw.05G043100 Carya illinoinensis HOM05D007403 ORTHO05D009306 1.7e-133 480.3 378 64.3
ATR1120G172 Amborella trichopoda HOM05D007403 ORTHO05D009306 4.9e-133 478.8 535 48.6
Lsat_1_v5_gn_7_77881 Lactuca sativa HOM05D007403 ORTHO05D009306 2.7e-131 473.0 500 50.8
PSO210G5116 Papaver somniferum HOM05D007403 ORTHO05D009306 1.7e-130 470.3 501 51.7
Peaxi162Scf00011g00136 Petunia axillaris HOM05D007403 ORTHO05D009306 4.8e-128 462.2 506 50.2
Gohir.A12G032700 Gossypium hirsutum HOM05D007403 ORTHO05D009306 2.4e-127 459.9 321 71.3
SGA_v2.0_scaffold1G00325 Striga asiatica HOM05D007403 ORTHO05D009306 2.0e-126 456.8 539 48.2
FAN08G0644 Fragaria x ananassa HOM05D007403 ORTHO05D009306 4.6e-123 445.7 551 47.4
Phvul.006G212700 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 6.0e-123 445.3 391 57.3
Sc06g0000280 Simmondsia chinensis HOM05D007403 ORTHO05D009306 1.3e-122 444.1 315 63.2
Rhsim11G0131100 Rhododendron simsii HOM05D007403 ORTHO05D009306 2.3e-122 443.4 501 50.1
unitig_27.g24942 Utricularia gibba HOM05D007403 ORTHO05D009306 2.8e-112 409.8 513 45.0
Zm00001eb240350 Zea mays HOM05D007403 ORTHO05D009306 8.7e-106 388.3 326 57.4
PSO170G1442 Papaver somniferum HOM05D002224 ORTHO05D002446 1.5e-102 377.5 357 55.5
Pp3c9_24800 Physcomitrium patens HOM05D007403 ORTHO05D009306 1.5e-97 360.9 554 38.3
AagrBONN_evm.TU.Sc2ySwM_344.1532 Anthoceros agrestis HOM05D007403 ORTHO05D009306 1.5e-94 350.9 523 39.6
AUR62029925 Chenopodium quinoa HOM05D007403 ORTHO05D009306 1.5e-94 350.9 509 42.2
SEGI_20290 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 2.2e-93 347.1 338 53.3
PGSC0003DMG400023750 Solanum tuberosum HOM05D007403 ORTHO05D009306 4.2e-92 342.8 325 54.2
CAN.G1352.31 Capsicum annuum HOM05D007403 ORTHO05D009306 7.2e-92 342.0 239 70.7
Ah.12g060250 Amaranthus hybridus HOM05D007403 ORTHO05D009306 6.9e-87 325.5 509 39.7
Hma1.2p1_0557F.1_g178360 Hydrangea macrophylla HOM05D007403 ORTHO05D009306 4.4e-73 279.6 265 57.0
SMO353G0333 Selaginella moellendorffii HOM05D007403 ORTHO05D009306 8.0e-67 258.8 417 40.3
Ca_02259_v3 Cicer arietinum L. HOM05D007403 ORTHO05D009306 1.8e-66 257.7 467 36.4
Os02g0210800 Oryza sativa ssp. japonica HOM05D007403 ORTHO05D009306 4.5e-62 243.0 156 68.6
Cpa.g.sc2.9 Carica papaya HOM05D007403 ORTHO05D009306 2.9e-61 240.4 233 52.8
SMO364G0780 Selaginella moellendorffii HOM05D007403 ORTHO05D009306 9.5e-60 235.3 392 39.3
SEGI_38556 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 7.8e-46 189.1 247 42.9
HPP92_020048 Vanilla planifolia HOM05D001327 ORTHO05D002270 3.7e-40 170.2 156 51.3
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 3.3e-36 157.1 129 62.8
HPP92_020049 Vanilla planifolia HOM05D007403 ORTHO05D009306 9.5e-36 155.6 200 44.5
CAN.G1305.34 Capsicum annuum HOM05D007403 ORTHO05D009306 4.7e-35 153.3 200 43.0
Haze_01630 Corylus avellana HOM05D007403 ORTHO05D009306 8.1e-35 152.5 198 48.5
CBR_g32500 Chara braunii HOM05D007403 ORTHO05D000800 8.6e-29 132.5 887 21.5
Cre07.g317650 Chlamydomonas reinhardtii HOM05D007403 ORTHO05D009306 8.1e-27 125.9 322 27.6
Sc06g0000290 Simmondsia chinensis HOM05D007403 ORTHO05D009306 2.0e-25 121.3 163 44.2
Psat1g137280 Pisum sativum HOM05D007403 ORTHO05D009306 4.1e-23 113.6 203 36.9
Cpa.g.sc2.7 Carica papaya HOM05D007403 ORTHO05D009306 7.1e-23 112.8 79 70.9
Cpa.g.sc2.8 Carica papaya HOM05D007403 ORTHO05D009306 3.9e-21 107.1 72 76.4
FAN13G0620 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.4e-18 97.8 70 65.7
Phvul.006G212950 Phaseolus vulgaris HOM05D007403 ORTHO05D009306 8.9e-18 95.9 78 61.5
SEGI_06818 Sequoiadendron giganteum HOM05D007403 ORTHO05D009306 6.9e-10 69.7 73 50.7
SalBow3G4149 Salvia bowleyana HOM05D001336 ORTHO05D001211 7.1e-07 59.7 474 21.5
Atru.chr12.2157 Acer truncatum HOM05D001336 ORTHO05D001211 9.3e-07 59.3 471 21.2
PSO017G6092 Papaver somniferum HOM05D001336 ORTHO05D001211 1.2e-06 58.9 340 22.6
arahy.Tifrunner.gnm1.ann1.84ELHW Arachis hypogaea HOM05D003633 ORTHO05D004245 2.1e-06 58.2 31 71.0
Gorai.004G040300 Gossypium raimondii HOM05D007403 ORTHO05D219009 3.5e-06 57.4 25 92.0
PSO063G6246 Papaver somniferum HOM05D001336 ORTHO05D001211 7.9e-06 56.2 344 21.8


User provided reference genes

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