Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 5.7e-57 224.2 126 100.0
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.8e-42 174.1 121 80.2
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.1e-38 162.5 121 77.7
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.5e-38 161.8 121 77.7
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.0e-37 160.2 123 75.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.5e-36 156.4 121 73.6
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.3e-36 155.2 123 74.8
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.3e-36 155.2 123 74.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 7.3e-36 154.1 123 73.2
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 9.5e-36 153.7 125 72.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.2e-35 153.3 125 76.0
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.2e-35 153.3 123 73.2
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.6e-35 152.9 125 75.2
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 72.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 6.2e-35 151.0 118 76.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.1e-34 150.2 125 73.6
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.1e-34 148.7 123 72.4
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.0e-34 148.3 125 71.2
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-33 146.7 125 70.4
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.5e-33 146.4 124 70.2
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-33 146.4 123 70.7
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.4e-33 145.2 125 69.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 4.4e-33 144.8 125 68.0
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.8e-33 144.4 124 67.7
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.3e-32 143.3 123 69.9
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.3e-32 143.3 123 69.9
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-31 139.4 124 67.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-31 139.4 124 67.7
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.4e-31 139.0 123 69.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.1e-31 138.3 121 70.2
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 124 66.9
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 67.2
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.2e-30 136.7 128 63.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.6e-30 136.3 123 68.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-30 136.3 123 67.5
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-30 136.3 123 68.3
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-30 136.0 123 69.1
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.1e-30 136.0 124 66.9
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.7e-30 135.6 123 67.5
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 2.7e-30 135.6 123 65.9
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 123 68.3
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.7e-30 135.6 125 67.2
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.7e-30 135.6 124 66.1
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.5e-30 135.2 129 66.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-30 134.4 123 65.0
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-30 134.4 123 65.0
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 6.0e-30 134.4 120 67.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 124 66.1
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 123 65.0
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 66.7
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 66.7
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 63.7
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.9e-29 131.7 123 64.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 123 64.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.1e-29 131.3 120 65.8
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 5.1e-29 131.3 124 66.9
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 6.6e-29 131.0 123 63.4
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 63.5
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 8.6e-29 130.6 127 65.4
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 8.6e-29 130.6 122 63.9
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 8.6e-29 130.6 123 63.4
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 105 70.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 63.7
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 122 62.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.1e-28 130.2 125 64.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-28 130.2 120 66.7
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.5e-28 129.8 122 62.3
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.9e-28 129.4 121 65.3
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.3e-28 128.6 126 61.9
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 4.3e-28 128.3 123 64.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 5.6e-28 127.9 117 66.7
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 7.3e-28 127.5 117 65.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 7.3e-28 127.5 127 61.4
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-27 126.3 126 59.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 65.6
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.1e-27 125.9 117 65.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 121 64.5
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 123 65.0
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.8e-27 125.6 129 62.8
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 3.6e-27 125.2 125 62.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.6e-27 125.2 124 62.9
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.6e-27 125.2 119 59.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 4.7e-27 124.8 123 61.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 4.7e-27 124.8 121 64.5
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 6.2e-27 124.4 125 61.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.2e-27 124.4 114 64.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 8.1e-27 124.0 128 60.9
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 8.1e-27 124.0 122 62.3
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.1e-26 123.6 95 71.6
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.1e-26 123.6 125 64.0
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.1e-26 123.6 127 61.4
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.1e-26 123.6 123 62.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 126 59.5
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.4e-26 122.5 126 60.3
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 2.4e-26 122.5 121 62.0
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 3.1e-26 122.1 120 60.8
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.0e-26 121.7 122 59.0
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 119 63.0
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 108 65.7
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 57.6
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 5.2e-26 121.3 123 62.6
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 5.2e-26 121.3 124 61.3
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 5.2e-26 121.3 124 58.1
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 6.8e-26 120.9 123 66.7
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 8.9e-26 120.6 126 61.1
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.9e-26 120.6 127 59.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.2e-25 120.2 94 73.4
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.2e-25 120.2 125 60.0
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.0e-25 119.4 124 58.1
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.0e-25 119.4 125 59.2
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 57.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 128 60.2
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.4e-25 118.6 123 58.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 3.4e-25 118.6 122 61.5
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 3.4e-25 118.6 122 61.5
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.4e-25 118.6 98 68.4
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.4e-25 118.2 127 59.1
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 4.4e-25 118.2 125 61.6
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 4.4e-25 118.2 119 59.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 7.6e-25 117.5 117 59.8
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 9.9e-25 117.1 128 59.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 9.9e-25 117.1 128 59.4
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 61.0
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.8
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 58.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 58.4
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.2e-24 115.9 128 58.6
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.9e-24 115.5 125 60.0
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.9e-24 115.5 125 60.0
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.9e-24 115.5 125 60.0
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 100 67.0
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.1e-23 113.6 130 56.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.1e-23 113.6 129 58.1
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.9e-23 112.8 130 56.9
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.9e-23 112.8 130 56.9
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.4e-23 112.5 130 56.9
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.4e-23 112.5 128 57.0
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.2e-23 112.1 123 56.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.2e-23 112.1 106 58.5
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 9.3e-23 110.5 128 54.7
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.6e-22 109.8 122 57.4
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 4.6e-22 108.2 123 56.1
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.9e-21 105.1 124 54.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 8.7e-21 104.0 122 54.9
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 8.7e-21 104.0 116 51.7
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 2.5e-20 102.4 125 54.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.3e-20 101.7 106 55.7
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 7.3e-20 100.9 123 56.1
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.8e-19 99.0 124 53.2
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.3e-16 90.1 107 56.1
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.9e-16 89.0 100 52.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.4e-15 86.7 123 45.5
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 5.4e-15 84.7 73 65.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.6e-14 83.2 119 42.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 4.6e-14 81.6 56 83.9
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 5.1e-13 78.2 56 80.4
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 8.7e-13 77.4 121 46.3
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 7.4e-12 74.3 119 43.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 9.0e-10 67.4 80 55.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 9.0e-10 67.4 103 45.6
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.5e-09 66.6 126 39.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.5e-09 66.6 73 58.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 3.2e-07 58.9 106 41.5


User provided reference genes

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