Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.2e-177 625.5 320 100.0
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.3e-108 397.1 321 71.0
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 9.6e-101 370.9 322 66.8
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.8e-91 340.1 299 67.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.6e-79 300.4 312 55.4
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 4.7e-79 298.9 308 55.8
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 7.9e-79 298.1 314 56.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 5.2e-78 295.4 314 56.4
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.2e-76 290.0 309 56.6
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 4.8e-76 288.9 307 53.7
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 5.3e-75 285.4 282 57.1
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 4.5e-74 282.3 307 55.4
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 6.5e-73 278.5 310 52.3
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.9e-72 276.9 305 54.4
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 4.2e-72 275.8 306 54.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 8.0e-71 271.6 314 52.5
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.4e-70 270.8 304 53.3
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.0e-70 269.6 314 52.2
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.0e-70 269.2 310 52.6
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.7e-70 268.5 314 52.2
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.2e-69 267.7 314 52.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.8e-68 263.1 314 51.0
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.4e-67 260.8 301 51.8
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.1e-67 259.6 309 52.1
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 7.0e-67 258.5 317 51.1
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 7.0e-67 258.5 308 48.1
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 4.5e-66 255.8 307 51.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 7.7e-66 255.0 312 49.4
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.2e-65 253.4 311 49.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.0e-65 252.3 312 49.0
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 3.2e-64 249.6 308 49.4
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.2e-63 247.7 312 48.4
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.6e-63 247.3 335 47.2
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 4.7e-63 245.7 309 47.2
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.4e-62 244.2 306 46.4
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.0e-62 243.0 304 49.7
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.2e-62 242.3 286 49.7
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.5e-61 240.7 309 45.3
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.0e-61 240.4 285 49.8
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.4e-61 239.2 312 46.5
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 9.8e-61 238.0 316 47.8
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.3e-60 237.7 324 48.1
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.7e-60 237.3 306 49.3
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 4.8e-60 235.7 318 47.5
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 8.3e-60 235.0 321 47.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 8.3e-60 235.0 308 44.2
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.4e-59 234.2 318 47.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.4e-59 234.2 303 48.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 2.4e-59 233.4 318 46.9
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 7.0e-59 231.9 308 46.4
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 9.1e-59 231.5 315 46.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 9.1e-59 231.5 323 46.4
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.0e-58 230.3 319 47.3
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.0e-58 230.3 308 47.4
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.5e-58 229.6 318 45.9
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 4.5e-58 229.2 310 45.2
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.8e-57 226.1 289 45.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 6.5e-57 225.3 315 47.0
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.6e-57 224.9 307 44.6
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 8.6e-57 224.9 307 44.6
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 8.6e-57 224.9 307 44.6
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 2.5e-56 223.4 296 48.3
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.2e-56 223.0 318 46.5
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 3.2e-56 223.0 317 46.4
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 5.5e-56 222.2 277 49.1
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 7.2e-56 221.9 315 46.7
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 7.2e-56 221.9 315 46.7
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 9.5e-56 221.5 290 44.1
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 9.5e-56 221.5 320 44.1
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 9.5e-56 221.5 320 44.1
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-55 221.1 310 44.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-55 221.1 285 45.3
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.6e-55 220.7 319 45.1
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.1e-55 220.3 284 45.4
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.8e-55 219.9 308 45.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.8e-55 219.9 322 44.7
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.6e-55 219.5 315 43.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 8.0e-55 218.4 261 48.7
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 8.0e-55 218.4 318 44.7
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.8e-54 217.2 322 45.0
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 4.0e-54 216.1 313 43.1
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 4.0e-54 216.1 316 43.4
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.2e-54 215.7 310 44.5
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 5.2e-54 215.7 291 47.1
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.5e-53 214.2 313 42.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.6e-53 213.4 315 44.4
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.7e-53 212.2 250 48.4
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 5.7e-53 212.2 310 43.9
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 9.8e-53 211.5 310 42.6
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.3e-52 211.1 310 43.5
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.3e-52 211.1 288 44.8
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.2e-52 210.3 314 44.3
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.8e-52 209.9 307 45.0
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 8.3e-52 208.4 289 47.1
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-51 208.0 287 44.6
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.4e-51 206.8 283 44.9
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 5.4e-51 205.7 290 44.5
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 9.2e-51 204.9 286 43.4
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.0e-50 203.8 323 44.3
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.5e-50 203.0 297 44.8
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.5e-50 203.0 309 42.1
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.3e-49 201.1 311 40.8
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.7e-49 200.7 311 40.8
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.8e-46 190.7 282 41.5
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 4.0e-46 189.5 286 42.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.5e-45 187.6 323 42.1
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 2.6e-45 186.8 289 41.9
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.4e-45 186.4 310 41.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.9e-44 183.3 300 41.0
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.9e-44 183.3 275 42.5
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.7e-44 183.0 286 40.6
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 3.7e-44 183.0 286 40.9
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.7e-42 176.8 286 39.9
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 4.6e-42 176.0 280 43.2
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.0e-41 174.9 201 51.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 3.0e-41 173.3 266 45.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.3e-40 169.5 287 40.1
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.5e-40 168.3 287 39.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 8.0e-39 165.2 287 41.8
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 7.0e-35 152.1 235 43.4
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 9.5e-32 141.7 162 53.7
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 6.4e-28 129.0 139 56.8
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 2.3e-25 120.6 290 32.1
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 1.9e-19 100.9 181 38.1
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 6.0e-18 95.9 129 45.0
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 1.1e-14 85.1 187 33.7
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 6.6e-09 65.9 167 31.7
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.9e-08 64.3 103 40.8
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 3.1e-06 57.0 89 41.6


User provided reference genes

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