Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.3e-236 822.8 451 100.0
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 2.5e-155 552.7 465 72.9
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.5e-147 526.2 456 68.6
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.1e-145 520.8 454 68.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 1.4e-145 520.4 459 70.6
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 7.6e-144 514.6 454 69.4
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 9.3e-142 507.7 454 68.7
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 6.7e-116 421.8 455 58.7
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 9.4e-110 401.4 455 56.7
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 2.0e-91 340.5 457 54.5
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.2e-88 331.3 473 48.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 3.4e-83 313.2 473 46.5
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.2e-74 283.9 458 49.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 8.3e-74 282.0 457 43.5
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 3.2e-73 280.0 472 44.1
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.1e-73 279.6 423 47.8
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 4.1e-73 279.6 459 51.2
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.5e-70 271.2 494 46.6
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.2e-69 268.1 476 43.5
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.7e-69 266.2 465 44.7
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.5e-67 261.2 465 42.8
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.7e-66 257.7 461 41.9
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.7e-66 256.5 470 41.5
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.9e-66 256.1 379 47.0
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 1.4e-65 254.6 459 44.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.4e-65 254.6 420 45.5
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.5e-62 244.6 434 44.7
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.5e-62 244.6 465 42.8
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.3e-62 243.4 486 39.3
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.3e-62 243.4 348 48.9
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 9.5e-62 241.9 475 40.4
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.1e-60 238.4 474 42.0
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-59 234.6 476 39.9
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-57 227.6 285 54.7
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 5.4e-57 226.1 490 40.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 3.5e-56 223.4 468 40.4
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.3e-55 221.5 429 42.9
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 3.0e-55 220.3 398 41.7
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.0e-55 220.3 348 48.3
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 7.3e-54 215.7 466 43.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.6e-53 214.5 491 42.4
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.4e-51 206.5 436 40.1
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 7.6e-51 205.7 478 40.0
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 7.6e-51 205.7 480 36.7
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 7.6e-51 205.7 475 38.1
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 3.8e-50 203.4 471 39.1
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 4.2e-49 199.9 338 44.4
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 9.2e-49 198.7 468 37.0
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 2.1e-48 197.6 473 39.1
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 4.6e-48 196.4 473 38.1
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 6.0e-48 196.1 486 36.6
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 8.7e-47 192.2 476 37.0
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 7.3e-46 189.1 449 37.4
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.3e-45 188.3 469 39.2
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.8e-45 187.2 472 37.9
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 4.8e-45 186.4 462 41.3
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.4e-44 184.9 471 37.6
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.8e-44 184.5 475 36.8
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.4e-44 184.1 475 36.0
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 3.1e-44 183.7 455 35.6
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.3e-44 183.0 231 53.7
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 2.6e-43 180.6 461 37.3
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 4.4e-43 179.9 373 38.6
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 7.6e-43 179.1 448 39.5
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 2.2e-42 177.6 469 36.5
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 4.9e-42 176.4 486 32.9
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.4e-42 176.0 475 37.1
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.4e-41 174.1 485 33.4
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 4.2e-41 173.3 459 34.2
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.2e-40 171.8 421 37.5
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.1e-40 171.0 472 35.0
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 4.6e-40 169.9 435 34.5
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 4.6e-40 169.9 465 35.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.7e-39 167.9 457 36.5
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 5.1e-39 166.4 489 34.8
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.5e-38 164.1 446 35.2
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 9.6e-38 162.2 256 46.1
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 2.4e-36 157.5 344 41.0
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 3.1e-36 157.1 458 35.6
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.5e-35 154.8 463 34.1
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 2.6e-35 154.1 428 35.3
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 4.5e-35 153.3 269 44.2
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 9.9e-35 152.1 472 37.1
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.7e-34 151.4 473 31.9
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.9e-34 150.6 443 36.3
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.9e-34 150.6 477 33.5
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 6.4e-34 149.4 468 33.5
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-33 148.7 444 36.3
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 3.2e-33 147.1 431 32.5
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.0e-31 142.1 389 34.4
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.0e-31 140.6 442 34.6
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 3.0e-31 140.6 323 37.5
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 5.1e-31 139.8 448 32.6
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 5.1e-31 139.8 492 33.3
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.3e-30 137.1 457 32.6
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 7.4e-30 136.0 481 32.6
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 7.4e-30 136.0 444 34.5
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 6.2e-29 132.9 357 33.9
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.0e-27 127.9 457 32.8
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.5e-27 126.7 433 33.7
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 4.9e-26 123.2 429 32.2
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 6.5e-26 122.9 371 36.1
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 2.1e-24 117.9 228 42.5
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 7.9e-24 115.9 222 42.8
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.0e-23 115.5 453 29.6
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-22 112.1 460 30.2
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 2.5e-22 110.9 440 31.4
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.5e-22 110.9 419 32.5
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 4.8e-21 106.7 488 30.3
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 4.0e-20 103.6 247 34.8
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 9.0e-20 102.4 282 36.5
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 5.0e-18 96.7 437 30.7
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 8.4e-18 95.9 418 32.3
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.6e-16 91.7 344 32.3
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 1.6e-16 91.7 432 28.0
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.1e-16 91.3 260 34.2
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.1e-16 91.3 370 30.8
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.7e-16 90.9 220 35.9
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.6e-16 90.1 344 32.0
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 3.0e-15 87.4 216 36.6
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 8.7e-15 85.9 508 27.0
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 1.9e-14 84.7 305 28.9
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.5e-14 84.3 483 27.5
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 1.6e-13 81.6 246 43.1
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 2.2e-13 81.3 293 29.4
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 6.3e-13 79.7 435 31.0
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 6.3e-13 79.7 339 28.6
CiPaw.09G066800 Carya illinoinensis HOM05D009670 ORTHO05D010890 1.2e-11 75.5 474 26.8
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 5.0e-10 70.1 470 31.3
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.4e-09 68.6 453 24.9
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 2.5e-09 67.8 406 28.8
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.6e-08 65.1 465 25.2
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 4.6e-08 63.5 124 36.3
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.4e-07 62.0 439 26.0
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.0e-06 58.2 187 30.5
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 2.0e-06 58.2 243 30.9


User provided reference genes

Program Settings