Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.5e-167 592.0 303 100.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 2.8e-126 455.7 303 78.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 5.9e-124 448.0 303 77.2
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.4e-122 443.4 303 76.2
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.5e-122 442.6 303 76.6
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.6e-116 423.3 303 73.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.1e-114 417.2 303 72.3
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 4.2e-114 415.2 303 72.6
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.6e-113 413.3 303 71.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.4e-112 410.2 304 74.3
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-112 409.8 301 70.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.7e-112 407.9 303 71.3
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 8.8e-112 407.5 304 70.7
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.2e-111 407.1 304 73.0
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.0e-111 406.4 303 71.0
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 5.7e-111 404.8 303 70.6
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 7.5e-111 404.4 302 70.9
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 8.2e-110 401.0 303 70.6
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 8.2e-110 401.0 303 68.3
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.1e-109 400.6 303 70.0
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.3e-109 398.3 303 68.6
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 9.1e-109 397.5 303 70.0
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.6e-108 396.7 303 69.0
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.6e-108 396.7 303 68.0
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.5e-108 395.6 303 69.6
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 4.5e-108 395.2 304 68.1
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 7.7e-108 394.4 303 70.6
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.3e-107 393.7 304 67.8
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.1e-106 390.6 303 69.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.5e-106 389.4 302 68.2
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 9.4e-106 387.5 306 67.3
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.2e-105 387.1 292 68.8
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 3.6e-105 385.6 305 67.2
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.7e-105 385.2 306 67.0
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 8.0e-105 384.4 303 66.7
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 5.2e-104 381.7 303 67.3
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 5.2e-104 381.7 292 68.2
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 5.2e-104 381.7 304 66.4
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 6.8e-104 381.3 299 67.2
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 8.8e-104 380.9 303 68.0
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.2e-103 380.6 303 66.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.5e-103 380.2 295 69.8
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.0e-103 379.8 305 67.9
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 3.4e-103 379.0 289 68.5
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 4.4e-103 378.6 304 65.5
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.7e-103 378.3 305 66.9
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 7.5e-103 377.9 304 65.5
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 7.5e-103 377.9 294 68.0
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 9.8e-103 377.5 301 66.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.7e-102 376.7 293 65.9
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 2.2e-102 376.3 289 68.9
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 2.2e-102 376.3 280 69.3
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 4.1e-101 372.1 302 67.9
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 7.0e-101 371.3 295 68.8
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.2e-100 370.5 304 65.1
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 3.5e-100 369.0 303 64.0
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 5.9e-100 368.2 303 64.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 7.7e-100 367.9 301 64.5
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.0e-99 367.5 307 64.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 5.0e-99 365.2 323 62.2
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 5.0e-99 365.2 284 66.2
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-98 363.6 301 64.5
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-98 363.6 304 63.5
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.9e-98 363.2 302 62.9
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 2.5e-98 362.8 266 71.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.2e-98 362.5 296 64.5
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.2e-98 362.5 289 66.1
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 3.2e-98 362.5 283 67.5
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.2e-97 360.5 272 68.8
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.6e-97 360.1 307 63.5
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.6e-97 360.1 285 69.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.6e-97 360.1 269 71.4
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 2.1e-97 359.8 301 62.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.7e-97 358.6 319 61.8
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 6.1e-97 358.2 274 69.0
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 8.0e-97 357.8 359 57.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 8.0e-97 357.8 282 66.0
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.3e-96 356.3 304 62.2
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.3e-96 356.3 304 61.2
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.0e-96 355.9 299 63.2
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.0e-96 355.5 304 60.9
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 5.2e-96 355.1 271 68.6
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 5.2e-96 355.1 296 66.2
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.8e-96 354.8 291 62.2
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.0e-95 353.2 304 62.2
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 5.7e-95 351.7 304 61.8
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.7e-95 351.7 268 70.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 7.5e-95 351.3 304 61.8
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 9.8e-95 350.9 289 64.0
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 9.8e-95 350.9 305 62.3
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.7e-94 350.1 304 60.2
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.7e-94 349.0 271 67.5
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.4e-93 347.1 281 65.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.8e-93 346.7 304 59.9
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 5.4e-93 345.1 303 60.7
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 5.4e-93 345.1 303 60.7
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.4e-93 345.1 286 63.6
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 7.0e-93 344.7 373 53.1
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 7.0e-93 344.7 286 64.0
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 9.2e-93 344.4 304 59.2
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 9.2e-93 344.4 303 60.7
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.2e-92 344.0 283 62.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.0e-92 343.2 291 60.1
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 2.7e-92 342.8 304 59.2
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.7e-92 342.8 284 61.6
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 3.5e-92 342.4 304 59.5
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.5e-92 342.4 302 60.6
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.7e-91 340.1 253 68.8
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.7e-91 340.1 250 70.4
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 5.0e-91 338.6 303 59.4
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.2e-89 334.0 291 58.8
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.6e-89 333.6 303 59.1
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.1e-89 333.2 303 59.1
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.1e-89 333.2 284 60.9
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 4.7e-89 332.0 304 58.9
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 8.9e-88 327.8 258 67.4
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.2e-87 327.4 312 60.3
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 9.8e-87 324.3 250 66.8
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.9e-86 322.0 250 66.4
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.1e-85 320.9 286 60.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.7e-83 313.5 249 66.3
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.9e-82 310.1 305 55.7
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 7.3e-82 308.1 304 55.3
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.2e-81 307.4 290 59.7
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.6e-81 307.0 302 57.9
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 3.6e-81 305.8 303 57.8
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 4.7e-81 305.4 292 55.1
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 6.2e-81 305.1 238 70.6
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.2e-81 305.1 303 57.8
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 2.3e-80 303.1 284 55.3
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.1e-80 302.8 303 57.8
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.3e-78 297.4 184 82.6
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.9e-77 293.5 241 63.1
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.3e-75 286.6 196 77.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-75 286.2 243 61.3
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.6e-75 285.0 282 53.9
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 6.2e-73 278.5 276 52.9
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 8.3e-70 268.1 280 52.5
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.1e-68 263.5 280 51.1
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.6e-65 253.8 238 56.7
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.8e-65 253.1 271 50.9
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.1e-64 251.1 237 55.3
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 6.8e-64 248.4 280 48.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.4e-63 246.1 147 85.7
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 5.8e-63 245.4 289 46.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 6.4e-62 241.9 293 48.8
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 1.9e-61 240.4 280 47.5
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.0e-59 233.0 236 56.4
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 5.8e-55 218.8 175 65.1
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.7e-54 217.2 184 63.0
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 9.6e-50 201.4 281 41.6
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.3e-49 201.1 271 43.2
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.0e-48 196.1 166 62.7
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.3e-43 181.0 122 74.6
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.1e-40 171.4 105 80.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.9e-38 163.3 100 83.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 6.4e-38 162.2 148 62.8
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.4e-37 160.2 141 59.6
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.6e-31 140.2 84 85.7
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 8.7e-27 125.2 195 44.6
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.1e-26 124.8 118 55.9
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.1e-26 124.8 118 55.9
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.9e-26 124.0 275 33.5
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 8.2e-25 118.6 82 73.2
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.9e-18 97.4 95 54.7
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 5.7e-18 95.9 189 37.0
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 8.2e-17 92.0 142 41.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-16 90.9 68 63.2
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 6.5e-14 82.4 103 43.7
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.9e-13 80.9 99 43.4
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.9e-12 75.5 100 47.0
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.8e-09 67.0 67 46.3
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.1e-08 65.1 123 40.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.3e-06 58.2 35 82.9
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 2.9e-06 57.0 181 25.4


User provided reference genes

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