Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 1.1e-38 162.9 85 100.0
Thecc.03G232200 Theobroma cacao HOM05D012518 ORTHO05D008997 1.3e-25 119.4 83 80.7
Gohir.D09G192932 Gossypium hirsutum HOM05D012518 ORTHO05D008997 4.0e-22 107.8 85 74.1
Gohir.D08G179100 Gossypium hirsutum HOM05D012518 ORTHO05D008997 5.3e-22 107.5 74 78.4
Gorai.006G216000 Gossypium raimondii HOM05D012518 ORTHO05D008997 2.6e-21 105.1 85 72.9
Gohir.A09G198400 Gossypium hirsutum HOM05D012518 ORTHO05D008997 3.4e-21 104.8 85 71.8
Gorai.004G187600 Gossypium raimondii HOM05D012518 ORTHO05D008997 4.5e-21 104.4 74 77.0
Gohir.A08G158700 Gossypium hirsutum HOM05D012518 ORTHO05D008997 4.9e-20 100.9 74 74.3
Gohir.A09G198600 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.1e-16 89.7 85 63.5
Gohir.A03G002300 Gossypium hirsutum HOM05D012518 ORTHO05D008997 5.7e-16 87.4 84 58.3
Gohir.A09G198900 Gossypium hirsutum HOM05D012518 ORTHO05D008997 2.2e-15 85.5 85 61.2
Gohir.D03G170000 Gossypium hirsutum HOM05D012518 ORTHO05D008997 4.8e-15 84.3 84 58.3
Gorai.003G180300 Gossypium raimondii HOM05D012518 ORTHO05D008997 4.8e-15 84.3 84 58.3
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 6.9e-14 80.5 85 55.3
Dinv28928 Davidia involucrata HOM05D007785 ORTHO05D008997 2.6e-13 78.6 84 56.0
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 7.7e-13 77.0 85 50.6
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 5.0e-12 74.3 85 48.2
Gorai.001G185600 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.4e-11 72.8 52 75.0
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 3.2e-11 71.6 80 51.2
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 5.5e-11 70.9 85 49.4
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 1.2e-10 69.7 82 46.3
arahy.Tifrunner.gnm1.ann1.TXA0XA Arachis hypogaea HOM05D007785 ORTHO05D008997 1.6e-10 69.3 74 51.4
arahy.Tifrunner.gnm1.ann1.XHE4AQ Arachis hypogaea HOM05D007785 ORTHO05D008997 1.6e-10 69.3 74 51.4
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 3.6e-10 68.2 80 45.0
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 3.6e-10 68.2 86 48.8
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 7.9e-10 67.0 77 46.8
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 1.0e-09 66.6 74 52.7
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 1.0e-09 66.6 71 50.7
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.0e-09 66.6 71 50.7
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 1.4e-09 66.2 80 47.5
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 1.4e-09 66.2 84 44.0
Ciclev10033202m.g Citrus clementina HOM05D007785 ORTHO05D008997 1.8e-09 65.9 84 47.6
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 3.0e-09 65.1 79 44.3
Glyma.11G042100 Glycine max HOM05D007785 ORTHO05D008997 3.9e-09 64.7 74 51.4
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 5.1e-09 64.3 77 49.4
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 1.1e-08 63.2 80 43.8
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 1.1e-08 63.2 74 48.6
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 1.1e-08 63.2 80 45.0
CSS0022493 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.5e-08 62.8 72 54.2
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 2.5e-08 62.0 79 50.6
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 4.3e-08 61.2 82 41.5
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 4.3e-08 61.2 85 47.1
Medtr4g098710 Medicago truncatula HOM05D007785 ORTHO05D008997 4.3e-08 61.2 81 46.9
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 4.3e-08 61.2 85 44.7
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 5.7e-08 60.8 80 41.2
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 7.4e-08 60.5 76 48.7
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 9.7e-08 60.1 70 51.4
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 9.7e-08 60.1 78 43.6
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 1.7e-07 59.3 77 48.1
Phvul.002G005800 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 1.7e-07 59.3 74 48.6
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 1.7e-07 59.3 79 45.6
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 2.2e-07 58.9 85 45.9
Potri.003G089100 Populus trichocarpa HOM05D007785 ORTHO05D008997 2.2e-07 58.9 77 46.8
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 3.7e-07 58.2 80 42.5
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 8.2e-07 57.0 68 51.5
Hund11261 Selenicereus undatus HOM05D018059 ORTHO05D008997 8.2e-07 57.0 79 51.9
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.1e-06 56.6 74 48.6
Prupe.5G041600 Prunus persica HOM05D024839 ORTHO05D025594 1.1e-06 56.6 71 49.3
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 1.1e-06 56.6 76 44.7
A05p24820 Brassica napus HOM05D010231 ORTHO05D012284 1.4e-06 56.2 77 45.5
BraA05t21365Z Brassica rapa HOM05D010231 ORTHO05D012284 1.4e-06 56.2 77 45.5
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 1.8e-06 55.8 75 44.0
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 1.8e-06 55.8 76 44.7
BcaC05g27853 Brassica carinata HOM05D010231 ORTHO05D012284 2.4e-06 55.5 68 47.1
BolC5t32585H Brassica oleracea HOM05D010231 ORTHO05D012284 2.4e-06 55.5 68 47.1
Cc08_g02350 Coffea canephora HOM05D007785 ORTHO05D008997 2.4e-06 55.5 71 45.1
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 2.4e-06 55.5 68 47.1
Ca_22059_v3 Cicer arietinum L. HOM05D007785 ORTHO05D008997 3.1e-06 55.1 81 42.0
Psat4g078560 Pisum sativum HOM05D007785 ORTHO05D008997 3.1e-06 55.1 81 45.7
BcaC05g27283 Brassica carinata HOM05D010231 ORTHO05D012284 4.1e-06 54.7 66 48.5
Glyma.05G113700 Glycine max HOM05D007785 ORTHO05D008997 4.1e-06 54.7 74 47.3
HanXRQChr16g0520951 Helianthus annuus HOM05D007785 ORTHO05D008997 4.1e-06 54.7 76 42.1
Sp1g28440 Schrenkiella parvula HOM05D010231 ORTHO05D012284 4.1e-06 54.7 75 42.7
Glyma.17G153500 Glycine max HOM05D007785 ORTHO05D008997 5.3e-06 54.3 74 45.9
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 5.3e-06 54.3 78 43.6
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 5.3e-06 54.3 76 43.4
Thhalv10009227m.g Eutrema salsugineum HOM05D010231 ORTHO05D012284 6.9e-06 53.9 65 47.7
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 6.9e-06 53.9 81 45.7
BcaB03g13730 Brassica carinata HOM05D010231 ORTHO05D012284 9.1e-06 53.5 69 49.3
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 9.1e-06 53.5 74 47.3
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 9.1e-06 53.5 69 46.4


User provided reference genes

Program Settings