Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 7.4e-184 647.1 340 100.0
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 5.5e-155 551.2 342 86.3
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 6.8e-153 544.3 361 80.3
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.8e-146 522.3 339 79.9
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.3e-143 510.8 339 79.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-137 493.8 339 77.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.6e-136 489.2 345 75.7
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.4e-136 488.8 345 75.7
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-135 485.3 345 75.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.7e-132 476.5 343 72.6
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 3.9e-132 475.3 344 71.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-131 473.4 338 76.6
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 9.5e-131 470.7 337 73.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.1e-130 469.5 338 76.3
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.3e-129 466.1 338 75.1
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.2e-128 463.8 336 73.5
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.6e-128 462.6 299 76.3
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.7e-127 458.8 292 77.4
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.4e-126 456.8 334 70.1
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.4e-126 456.8 334 70.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.9e-126 456.4 294 75.2
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 9.2e-126 454.1 333 69.1
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.5e-125 452.2 334 69.5
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.6e-125 451.8 337 68.2
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 7.8e-125 451.1 289 74.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.0e-124 450.7 301 73.8
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.3e-124 450.3 299 73.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.7e-124 449.9 296 73.0
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-124 449.5 340 71.5
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 5.1e-124 448.4 290 76.2
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 5.1e-124 448.4 337 67.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 8.6e-124 447.6 290 75.9
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 8.6e-124 447.6 342 67.8
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.5e-123 446.0 293 74.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.6e-122 443.4 290 73.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.1e-122 443.0 346 66.8
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.1e-121 440.7 336 66.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.8e-121 439.9 341 68.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.8e-121 439.9 303 70.6
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.8e-121 439.9 297 73.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 2.3e-121 439.5 344 66.9
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.1e-121 439.1 306 71.6
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.0e-121 438.7 290 73.1
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 5.2e-121 438.3 294 72.1
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.9e-121 437.6 290 74.1
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 8.9e-121 437.6 335 68.7
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 8.9e-121 437.6 343 66.8
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.2e-120 437.2 332 66.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-120 436.8 295 72.2
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.0e-120 436.4 342 67.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.0e-120 436.4 299 70.2
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.0e-120 436.4 294 73.8
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.6e-120 436.0 340 66.8
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.4e-120 435.6 302 72.2
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.4e-120 435.6 299 72.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 4.4e-120 435.3 348 65.8
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.4e-120 435.3 290 74.5
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.8e-120 434.9 293 73.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.8e-120 434.9 294 73.5
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 7.6e-120 434.5 294 71.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.6e-120 434.5 335 66.0
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.3e-119 433.7 337 68.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.9e-119 432.6 341 67.2
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.9e-119 432.6 337 68.2
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.7e-119 432.2 304 72.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 3.7e-119 432.2 294 71.4
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 6.4e-119 431.4 298 68.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 6.4e-119 431.4 294 72.8
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 8.3e-119 431.0 342 69.3
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.1e-118 430.6 299 72.2
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.9e-118 429.9 342 67.0
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.4e-118 429.5 297 71.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 4.1e-118 428.7 293 71.7
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.1e-118 428.7 340 66.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.1e-118 427.9 295 71.9
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 7.1e-118 427.9 298 70.5
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 9.2e-118 427.6 344 69.5
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.6e-117 426.8 293 71.0
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.6e-117 426.8 290 71.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.6e-117 426.8 307 68.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.1e-117 426.4 343 67.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.8e-117 424.5 290 70.0
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.8e-117 424.5 290 70.0
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.0e-116 424.1 342 65.8
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.0e-116 422.5 339 67.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 4.3e-115 418.7 292 70.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 5.6e-115 418.3 340 65.3
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.6e-114 415.6 347 69.2
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 3.6e-114 415.6 293 69.6
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-113 414.1 302 69.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.0e-113 412.1 345 65.5
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.6e-112 409.5 334 63.5
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 7.6e-112 407.9 286 70.3
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 9.9e-112 407.5 293 69.3
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.7e-111 406.8 292 68.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.9e-111 406.0 392 58.2
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.8e-111 405.6 292 67.5
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 8.4e-111 404.4 292 67.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.0e-108 397.5 298 64.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.3e-108 396.4 296 65.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.9e-108 395.6 290 68.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.6e-106 390.2 301 68.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.1e-106 389.8 292 65.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.8e-106 389.4 333 62.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 5.8e-104 381.7 331 59.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.9e-103 379.4 293 65.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.4e-102 377.1 268 70.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.4e-102 375.2 295 61.4
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.1e-100 368.6 297 62.6
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.8e-98 362.8 293 65.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.5e-96 357.1 297 64.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.0e-92 342.8 338 52.7
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.6e-90 337.0 290 57.2
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 6.5e-87 325.1 271 61.3
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.4e-86 323.9 286 55.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 5.5e-86 322.0 310 58.7
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.8e-82 308.9 303 52.1
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 9.0e-81 304.7 261 65.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-80 304.3 259 59.8
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.0e-73 278.1 190 72.1
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.5e-72 277.3 313 49.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.0e-71 272.3 359 40.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 9.4e-70 268.1 289 46.4
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.3e-68 263.5 288 46.5
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-67 260.4 191 69.6
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 4.8e-66 255.8 292 46.2
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.1e-65 252.7 287 43.6
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 5.3e-65 252.3 273 51.6
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.9e-61 238.4 159 71.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 4.4e-59 232.6 258 46.9
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.6e-56 223.4 182 63.2
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.2e-46 189.9 222 46.8
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.5e-40 169.9 280 36.4
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 5.5e-38 162.5 113 70.8
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.8e-34 150.2 130 58.5
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-28 131.3 101 63.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.3e-28 130.6 133 51.9
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-27 127.9 73 82.2
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 9.8e-27 125.2 97 63.9
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.3e-26 124.8 88 65.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.4e-25 120.6 76 75.0
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.4e-25 120.6 114 57.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 7.0e-25 119.0 129 55.0
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.2e-25 118.6 68 77.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 4.6e-24 116.3 87 66.7
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.5e-22 110.5 93 53.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.3e-22 109.0 172 38.4
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.8e-20 102.4 77 59.7
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 6.0e-16 89.4 60 68.3
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 2.3e-15 87.4 58 72.4
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.0e-12 76.6 133 39.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 6.8e-12 75.9 46 71.7
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.2e-11 75.1 97 49.5
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.3e-10 68.9 52 59.6
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 7.1e-09 65.9 53 54.7
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.5e-08 63.5 91 36.3


User provided reference genes

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