Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 2073.5 1041 100.0
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1818.5 1118 82.3
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1758.0 1122 80.0
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1647.5 1122 76.0
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1646.3 1122 76.0
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1640.2 1122 75.9
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1396.7 1125 64.5
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1374.8 1126 63.7
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1373.2 1112 63.9
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1362.4 1141 62.7
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1346.6 1118 62.4
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1342.4 1125 62.5
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1334.7 1127 62.6
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1297.0 1136 61.4
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1285.0 1134 60.4
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1285.0 1118 60.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1284.2 1118 60.3
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1281.9 1141 60.0
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1278.8 1118 60.0
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1274.2 1141 59.6
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1273.8 1120 59.6
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1273.5 1130 59.0
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1273.1 1117 59.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1268.4 1118 59.7
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1268.1 1127 60.1
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1266.1 1118 59.6
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1266.1 1118 59.6
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1255.7 1132 59.5
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1214.9 1137 57.9
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1208.4 1146 56.7
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1204.1 1142 56.5
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1199.1 1134 57.4
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1196.0 1135 57.2
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1192.9 1131 56.3
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1190.6 1136 57.3
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1184.9 1123 57.2
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1184.9 1130 55.1
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1170 55.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1130 55.8
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1173.3 1130 56.5
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1161.7 1129 56.6
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1159.8 1122 55.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1159.8 1139 54.7
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1159.4 1138 54.2
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1156.0 1131 56.1
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1155.6 1131 56.6
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1154.0 1101 56.9
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1149.0 1129 55.4
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1142.9 1135 55.6
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1137.1 1127 55.7
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1133.6 1137 53.1
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1128.2 1135 53.0
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1124.8 1137 52.8
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1124.4 1134 53.0
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1118.6 1090 56.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1116.7 1143 53.0
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1115.1 1140 52.7
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1112.4 1139 52.3
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1111.7 1139 52.3
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1110.5 1136 53.1
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1108.2 1078 53.9
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1107.4 1136 52.3
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1101.7 1123 54.5
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1097.8 1132 52.7
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1094.0 1132 52.5
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1092.0 1076 54.5
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1091.6 1139 52.2
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1090.5 1141 51.3
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1080.9 1136 51.1
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1078.9 1134 51.9
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 1.1e-310 1070.1 1128 51.0
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 2.4e-310 1068.9 1128 50.9
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 2.4e-310 1068.9 1138 52.0
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 1.0e-308 1063.5 1128 50.9
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 1.0e-308 1063.5 1128 50.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 5.0e-308 1061.2 1151 52.0
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 6.6e-308 1060.8 1014 55.8
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 4.3e-307 1058.1 1129 51.3
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 9.5e-307 1057.0 1131 51.5
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 6.2e-306 1054.3 1145 50.8
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 8.0e-306 1053.9 1130 51.0
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 2.2e-303 1045.8 1147 51.6
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 8.6e-300 1033.9 1141 50.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 6.4e-287 991.1 1041 52.3
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 1.5e-283 979.9 1147 48.6
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 1.4e-281 973.4 1103 50.0
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 7.6e-280 967.6 1174 47.3
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.6e-277 959.9 1130 48.6
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 1.3e-271 940.3 1110 47.6
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 3.0e-268 929.1 1145 46.6
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.6e-266 923.3 759 60.1
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.2e-263 912.9 653 69.8
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 8.4e-263 911.0 639 71.4
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 8.5e-247 857.8 1137 44.2
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 3.6e-245 852.4 898 53.1
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 3.2e-238 829.3 642 65.7
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.0e-223 781.2 641 61.2
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 2.6e-219 766.5 643 60.8
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 3.4e-219 766.1 1125 41.2
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 5.4e-217 758.8 559 68.3
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 2.3e-191 673.7 561 61.9
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 1.8e-188 664.1 1207 36.5
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 3.7e-186 656.4 1235 35.5
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.6e-184 651.0 1156 37.9
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 9.5e-182 641.7 640 52.5
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 1.2e-171 608.2 463 66.7
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 2.2e-170 604.0 602 55.0
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.3e-150 537.0 592 48.3
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.0e-122 445.7 512 49.2
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.2e-121 440.7 484 51.2
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 8.0e-112 409.5 478 49.8
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.4e-77 293.5 710 34.4
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-70 272.7 572 32.5
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.4e-70 270.8 262 54.2
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 3.7e-69 267.7 1600 24.2
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 2.4e-68 265.0 548 33.2
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-65 256.1 406 39.7
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-63 247.7 379 40.9
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-57 229.6 580 29.8
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 9.9e-54 216.5 439 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 4.9e-53 214.2 521 31.3
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-44 186.0 671 27.3
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-44 186.0 671 27.3
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 5.6e-41 174.1 372 33.3
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-40 172.9 176 50.0
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 5.5e-36 157.5 178 49.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-35 156.0 206 44.2
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-33 149.8 221 41.2
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 9.3e-28 130.2 218 36.2
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 6.7e-26 124.0 110 55.5
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 3.7e-24 118.2 83 71.1
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-23 114.8 99 59.6
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-22 112.5 97 58.8
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-19 102.4 240 27.1
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 2.3e-18 99.0 123 41.5
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 2.5e-17 95.5 139 42.4
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 6.3e-16 90.9 55 81.8
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 2.2e-13 82.4 53 67.9
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 7.2e-12 77.4 54 66.7
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 3.9e-10 71.6 63 50.8
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-09 67.8 59 54.2
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 9.7e-09 67.0 47 59.6
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 9.7e-09 67.0 47 59.6
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 6.3e-08 64.3 86 40.7
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 5.3e-07 61.2 150 30.0
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-06 58.9 88 36.4


User provided reference genes

Program Settings