Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 8.0e-85 317.0 154 100.0
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 7.2e-62 240.7 140 83.6
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 9.5e-62 240.4 140 82.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.2e-61 240.0 140 82.9
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.1e-61 239.2 140 83.6
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.1e-61 237.7 140 82.9
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.8e-60 236.1 140 82.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 9.2e-57 223.8 142 75.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.2e-56 223.4 140 76.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.0e-56 222.6 142 76.8
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 4.6e-56 221.5 142 75.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 5.9e-56 221.1 142 75.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 5.9e-56 221.1 142 76.1
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.8e-56 220.7 142 75.4
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.7e-55 219.5 141 75.2
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.3e-55 219.2 142 74.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.6e-55 217.6 142 75.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 6.6e-55 217.6 142 76.1
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 8.6e-55 217.2 142 73.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.5e-54 216.5 142 74.6
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.9e-54 216.1 142 73.9
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.9e-54 216.1 142 75.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.9e-54 216.1 142 75.4
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.9e-54 216.1 142 73.2
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.9e-54 216.1 142 73.2
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.3e-54 215.3 142 73.2
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.3e-54 214.9 141 73.0
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.3e-54 214.2 142 71.8
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 7.3e-54 214.2 142 74.6
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 9.5e-54 213.8 142 71.8
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.6e-53 213.0 142 74.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.1e-53 212.6 142 71.8
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.8e-53 212.2 142 71.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.8e-53 212.2 142 73.2
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.0e-53 210.7 142 72.5
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.0e-52 210.3 142 72.5
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.8e-52 209.5 142 72.5
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.8e-52 209.5 142 71.8
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.3e-52 209.1 142 71.1
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 4.0e-52 208.4 142 70.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.0e-52 208.4 142 73.2
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 5.2e-52 208.0 142 70.4
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 6.8e-52 207.6 142 69.7
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 6.8e-52 207.6 142 71.1
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 8.9e-52 207.2 141 72.3
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.2e-51 206.8 142 69.0
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.5e-51 206.5 139 72.7
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.6e-51 205.7 139 70.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.4e-51 204.9 142 69.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.4e-51 204.9 142 69.7
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.4e-51 204.9 142 68.3
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.4e-51 204.9 139 70.5
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.4e-51 204.9 142 72.5
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.8e-51 204.5 142 70.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 7.5e-51 204.1 142 69.0
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 7.5e-51 204.1 142 68.3
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 7.5e-51 204.1 142 69.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 9.8e-51 203.8 141 70.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-50 203.4 142 67.6
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.3e-50 203.4 142 68.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-50 203.4 142 68.3
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-50 203.4 142 68.3
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-50 203.4 142 68.3
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-50 203.0 142 67.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-50 203.0 142 67.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.7e-50 203.0 142 67.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-50 203.0 142 67.6
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.2e-50 202.6 142 66.9
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.2e-50 202.6 142 66.9
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.2e-50 202.6 142 66.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.2e-50 202.6 136 73.5
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.9e-50 202.2 139 71.2
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.9e-50 202.2 142 69.7
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.9e-50 202.2 140 68.6
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.7e-50 201.8 142 66.9
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.7e-50 201.8 141 70.2
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.7e-50 201.8 141 70.2
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 4.9e-50 201.4 142 66.9
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.4e-50 201.1 142 67.6
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.4e-50 201.1 142 67.6
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.4e-50 201.1 140 67.9
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 8.3e-50 200.7 142 67.6
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 1.1e-49 200.3 141 68.1
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-49 200.3 142 66.2
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.4e-49 199.9 140 67.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.4e-49 199.9 141 70.2
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 2.4e-49 199.1 138 69.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 4.1e-49 198.4 142 66.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 7.0e-49 197.6 140 66.4
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 7.0e-49 197.6 142 66.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.2e-49 197.2 138 71.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.2e-48 196.8 138 71.0
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 3.5e-48 195.3 142 66.2
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.6e-48 194.9 134 72.4
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.7e-47 193.0 193 55.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.7e-47 193.0 193 55.4
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.3e-47 192.6 138 67.4
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.3e-47 192.6 136 66.9
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.3e-47 192.6 140 67.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 5.0e-47 191.4 140 66.4
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 6.6e-47 191.0 142 66.9
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.6e-47 191.0 126 71.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 6.6e-47 191.0 141 65.2
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.6e-47 190.7 138 69.6
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.6e-47 190.7 138 69.6
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 8.6e-47 190.7 141 68.1
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-46 190.3 138 69.6
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-46 190.3 170 59.4
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.5e-46 189.9 157 61.1
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.5e-46 189.9 142 64.1
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.5e-46 189.9 142 63.4
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 2.5e-46 189.1 126 71.4
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.5e-46 189.1 141 66.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.5e-46 189.1 138 67.4
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.5e-46 189.1 126 70.6
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.3e-46 188.3 142 64.1
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-45 186.8 141 63.8
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.8e-45 185.7 142 68.3
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 6.2e-45 184.5 191 51.8
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.1e-44 183.7 137 63.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.8e-44 183.0 142 63.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 4.0e-44 181.8 140 65.0
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.2e-43 180.3 126 69.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.5e-43 179.9 138 63.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.5e-43 179.9 141 63.1
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 2.6e-43 179.1 132 66.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.4e-43 178.7 136 63.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 5.8e-43 177.9 139 62.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 5.8e-43 177.9 142 62.7
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 9.8e-43 177.2 137 62.8
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.2e-42 176.0 143 60.8
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 3.7e-42 175.3 117 73.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 3.7e-42 175.3 140 64.3
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 8.3e-42 174.1 142 62.0
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 3.2e-41 172.2 142 61.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 5.4e-41 171.4 141 61.7
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.6e-40 169.9 138 63.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-39 166.8 175 53.1
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.3e-39 166.8 142 61.3
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.3e-39 166.0 142 59.2
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.3e-38 161.8 142 57.0
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.8e-36 156.4 129 58.1
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.0e-36 155.2 129 58.1
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 4.4e-35 151.8 125 61.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.2e-34 149.4 108 67.6
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-33 146.0 135 57.8
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.6e-32 143.3 139 54.7
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.5e-32 142.1 138 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 7.8e-32 141.0 140 51.4
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 7.8e-32 141.0 142 52.1
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.5e-30 136.0 125 55.2
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.3e-30 135.6 125 55.2
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 7.3e-30 134.4 285 33.3
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 8.9e-28 127.5 124 52.4
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.6e-24 116.7 119 48.7
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.7e-23 113.2 73 75.3
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.1e-21 106.3 80 63.8
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.1e-21 106.3 82 63.4
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.8e-20 103.2 67 71.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 9.0e-20 100.9 122 46.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.3e-17 90.9 103 50.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.3e-17 90.9 103 50.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.3e-17 90.9 103 50.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.6e-16 90.1 61 67.2
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.3e-15 87.0 59 66.1
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 2.3e-15 86.3 116 41.4
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.0e-15 85.9 65 60.0
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.1e-14 84.0 87 52.9
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 2.8e-13 79.3 68 58.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-13 78.6 113 43.4
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.1e-12 75.9 54 68.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.1e-12 75.9 54 68.5
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 5.3e-12 75.1 68 57.4
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 2.9e-10 69.3 122 36.9
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 4.9e-10 68.6 40 70.0
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 8.4e-10 67.8 112 40.2
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.3e-07 60.5 115 39.1
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.3e-07 60.5 42 66.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.8e-07 60.1 46 63.0
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 3.0e-07 59.3 34 76.5
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.9e-07 58.9 38 73.7
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 6.7e-07 58.2 34 73.5
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 9.6e-06 54.3 82 40.2


User provided reference genes

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