Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 0.0e+00 1127.5 659 100.0
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 9.4e-260 900.2 704 78.7
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 1.5e-252 876.3 702 76.9
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.4e-226 790.0 703 71.1
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.7e-224 781.9 703 70.7
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.1e-223 780.4 703 70.6
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.5e-209 733.4 696 67.7
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 1.9e-183 646.7 708 60.0
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 1.3e-173 614.0 712 60.3
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 3.7e-171 605.9 777 54.4
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 6.3e-171 605.1 717 57.6
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 1.4e-170 604.0 714 58.7
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.5e-169 600.5 716 59.5
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.7e-168 597.0 714 58.8
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 2.2e-168 596.7 706 59.2
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 5.0e-168 595.5 707 59.3
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 8.5e-168 594.7 716 56.8
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.9e-167 593.6 719 58.0
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 3.3e-164 582.8 708 57.8
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 3.1e-162 576.2 714 57.8
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 5.3e-162 575.5 717 57.2
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 5.5e-159 565.5 700 56.9
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 6.7e-157 558.5 707 57.1
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 7.4e-156 555.1 708 56.8
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.2e-153 547.7 715 55.8
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 2.6e-153 546.6 735 54.3
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.5e-153 546.2 708 56.5
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.9e-153 545.4 708 56.8
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 1.3e-152 544.3 733 54.8
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 8.5e-152 541.6 713 56.4
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 3.0e-149 533.1 715 54.1
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 1.1e-148 531.2 715 53.7
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 3.7e-147 526.2 715 53.8
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.1e-146 524.6 716 53.1
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 3.1e-146 523.1 709 53.5
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 1.2e-145 521.2 731 51.8
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 2.6e-145 520.0 707 54.6
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.5e-143 514.2 711 53.7
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 5.5e-143 512.3 704 52.6
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 8.0e-142 508.4 698 51.7
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 1.8e-141 507.3 716 53.1
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 3.0e-141 506.5 710 52.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 6.8e-141 505.4 711 53.3
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 7.5e-140 501.9 689 53.8
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 4.5e-137 492.7 696 52.0
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 4.5e-137 492.7 713 51.5
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 4.5e-137 492.7 703 54.2
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 1.7e-136 490.7 703 52.3
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 6.5e-136 488.8 587 61.0
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 1.1e-135 488.0 717 53.4
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 8.8e-133 478.4 739 52.0
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.2e-132 478.0 712 51.0
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.5e-132 477.6 739 52.2
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 1.5e-132 477.6 712 51.3
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 3.1e-130 469.9 714 50.4
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 5.4e-130 469.2 699 50.5
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 4.5e-129 466.1 706 50.3
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 4.5e-129 466.1 714 50.6
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 2.3e-128 463.8 697 49.1
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 1.9e-127 460.7 698 49.9
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 2.8e-126 456.8 742 50.1
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 3.6e-126 456.4 709 50.4
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 6.1e-126 455.7 717 50.1
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 5.2e-125 452.6 728 48.2
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.2e-124 451.4 717 50.8
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 4.4e-124 449.5 701 49.9
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 4.4e-124 449.5 698 49.3
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 7.5e-124 448.7 700 49.1
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 2.8e-123 446.8 698 48.4
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 2.8e-123 446.8 708 48.6
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 3.7e-123 446.4 701 49.6
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 6.3e-123 445.7 701 49.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.8e-122 444.1 710 50.1
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 1.8e-122 444.1 729 45.4
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 4.1e-122 443.0 699 49.4
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 5.4e-122 442.6 705 50.5
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 1.6e-121 441.0 715 48.3
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 3.5e-121 439.9 706 49.0
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 3.9e-120 436.4 693 51.8
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 9.5e-119 431.8 715 51.9
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 8.9e-117 425.2 707 49.9
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 1.2e-116 424.9 693 48.6
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 8.3e-115 418.7 698 47.1
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 4.1e-114 416.4 707 50.9
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 7.8e-113 412.1 583 56.4
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 3.9e-112 409.8 701 44.1
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 8.6e-112 408.7 737 47.5
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 7.3e-111 405.6 670 50.3
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 1.6e-110 404.4 877 42.9
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 2.2e-107 394.0 571 54.3
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 8.3e-107 392.1 705 45.4
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 6.6e-104 382.5 546 52.7
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 6.2e-102 375.9 713 45.9
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 1.1e-98 365.2 348 60.1
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 1.1e-98 365.2 699 47.6
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 7.8e-97 359.0 698 40.1
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.1e-93 348.6 703 42.5
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 3.1e-93 347.1 538 51.7
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 1.3e-86 325.1 484 56.0
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 1.1e-85 322.0 328 56.7
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 7.6e-84 315.8 331 54.7
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 3.3e-79 300.4 296 59.5
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 1.4e-77 295.0 707 40.6
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 8.7e-72 275.8 206 71.4
Gorai.006G192000 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.1e-70 269.2 333 60.1
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 4.9e-67 260.0 300 52.0
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 9.3e-66 255.8 345 48.4
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 6.7e-64 249.6 210 61.9
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 7.4e-63 246.1 168 77.4
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.1e-62 244.6 168 77.4
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 5.3e-61 240.0 294 48.3
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 3.8e-59 233.8 296 51.4
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 5.0e-59 233.4 454 47.1
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 3.8e-51 207.2 313 45.7
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 5.7e-47 193.4 221 53.8
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 3.0e-40 171.0 519 42.4
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 5.3e-37 160.2 336 37.5
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 7.7e-36 156.4 361 35.2
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 7.2e-34 149.8 775 29.4
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.0e-32 146.0 436 39.2
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 1.4e-32 145.6 266 42.9
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 2.3e-32 144.8 247 40.9
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 9.1e-29 132.9 194 42.3
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 5.9e-28 130.2 400 40.8
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 9.8e-23 112.8 439 33.9
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 1.7e-22 112.1 208 41.8
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 2.2e-19 101.7 137 49.6
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.1e-18 99.4 84 67.9
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 5.7e-15 87.0 129 48.8
BolC8t49477H Brassica oleracea HOM05D004897 ORTHO05D005928 1.4e-13 82.4 320 30.9
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 4.1e-13 80.9 76 64.5
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 7.0e-13 80.1 226 32.7
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 6.6e-11 73.6 127 40.2
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 6.6e-11 73.6 127 40.2
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 6.6e-11 73.6 127 40.2
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 6.6e-11 73.6 127 40.2
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.3e-10 70.9 47 85.1
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.2e-09 69.3 87 48.3
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.4e-08 65.9 62 51.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 6.8e-08 63.5 331 25.7
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 3.4e-07 61.2 65 56.9
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 9.8e-07 59.7 118 36.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.3e-06 59.3 328 25.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.7e-06 58.9 353 24.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.9e-06 58.2 366 24.0
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.9e-06 58.2 366 24.0
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.9e-06 58.2 366 24.0
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 3.7e-06 57.8 346 24.9
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.7e-06 57.8 328 25.0
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 3.7e-06 57.8 328 23.2
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 4.9e-06 57.4 366 23.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 6.4e-06 57.0 346 24.3
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 6.4e-06 57.0 124 40.3
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 6.4e-06 57.0 328 24.7
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.3e-06 56.6 304 23.0


User provided reference genes

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