Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 3.1e-66 255.0 129 100.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.1e-62 240.7 127 94.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.7e-60 234.2 131 90.1
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.1e-58 226.9 127 89.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 9.1e-58 226.9 127 87.4
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.2e-57 226.5 126 88.1
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.2e-56 222.2 127 85.8
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.9e-56 221.9 127 87.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.0e-56 221.1 129 86.0
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.4e-55 219.5 128 85.9
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.5e-55 218.8 127 85.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.2e-55 218.4 127 85.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.2e-55 218.4 127 85.0
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 5.5e-55 217.6 127 83.5
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.2e-54 216.5 130 84.6
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 5.2e-53 211.1 127 84.3
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.2e-53 211.1 127 85.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.2e-53 211.1 127 85.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 8.8e-53 210.3 127 84.3
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 8.8e-53 210.3 128 84.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.1e-52 209.9 127 82.7
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.3e-52 208.4 127 79.5
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 3.3e-52 208.4 127 78.7
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.3e-52 208.4 127 83.5
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.3e-52 208.4 123 82.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-51 206.1 127 83.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.7e-51 204.9 129 82.9
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 3.7e-51 204.9 127 83.5
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 6.3e-51 204.1 127 80.3
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 6.3e-51 204.1 129 82.9
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 8.2e-51 203.8 130 80.8
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 8.2e-51 203.8 127 80.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.1e-50 203.4 127 81.1
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.4e-50 203.0 127 83.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.4e-50 203.0 122 81.1
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 83.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.1e-50 201.8 127 78.7
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.1e-50 201.8 129 81.4
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.1e-50 201.8 127 81.1
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 4.1e-50 201.4 130 79.2
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.0e-50 200.7 127 77.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.1e-50 200.3 130 82.3
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 9.1e-50 200.3 130 78.5
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 9.1e-50 200.3 129 81.4
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.2e-49 199.9 127 78.7
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.2e-49 199.9 130 81.5
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.6e-49 198.7 129 79.8
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-49 198.4 125 80.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.5e-49 198.4 129 77.5
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.5e-49 198.4 129 77.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 5.9e-49 197.6 128 77.3
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 7.7e-49 197.2 127 80.3
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.3e-48 196.4 129 79.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-48 196.4 116 83.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.3e-48 196.4 133 78.9
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 81.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.7e-48 196.1 125 80.0
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.9e-48 195.3 127 79.5
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.9e-48 195.3 129 79.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.8e-48 194.9 130 79.2
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 79.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 130 80.0
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 130 80.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-47 193.4 130 80.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.5e-47 193.0 131 80.9
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.5e-47 192.2 131 75.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-47 192.2 132 78.8
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 78.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.2e-47 191.4 130 76.9
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.2e-47 191.4 130 76.9
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-46 189.5 131 74.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.7e-46 188.7 134 76.9
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.7e-46 188.7 134 76.9
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.0e-46 187.2 134 78.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 8.0e-46 187.2 134 77.6
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 8.0e-46 187.2 132 77.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.0e-46 187.2 133 77.4
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.0e-45 186.8 127 76.4
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.0e-45 186.8 127 76.4
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.4e-45 186.4 131 77.1
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 2.3e-45 185.7 132 75.8
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 133 76.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.0e-45 185.3 133 75.2
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.0e-45 185.3 133 75.9
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.0e-45 185.3 133 75.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 8.8e-45 183.7 128 75.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.2e-44 183.3 130 74.6
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.6e-44 182.2 118 77.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.6e-44 182.2 129 73.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.4e-44 181.4 130 72.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.4e-44 181.4 126 77.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 5.7e-44 181.0 132 75.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 5.7e-44 181.0 132 75.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 5.7e-44 181.0 132 75.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.5e-44 180.6 126 77.8
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.7e-44 180.3 127 74.8
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.7e-44 180.3 118 81.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 133 75.2
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.7e-43 179.5 115 76.5
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.7e-43 179.5 131 74.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 3.7e-43 178.3 114 76.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.8e-43 177.9 116 80.2
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 6.3e-43 177.6 125 73.6
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 73.3
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.8e-42 176.0 104 85.6
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.1e-42 175.3 132 72.0
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 73.3
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.1e-42 174.9 131 74.0
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 127 72.4
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 9.1e-42 173.7 129 69.8
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 72.5
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 72.5
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 5.9e-41 171.0 131 72.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 96 87.5
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 72.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.8e-40 168.3 130 70.0
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 8.5e-40 167.2 124 66.1
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.2e-39 165.2 96 82.3
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 5.5e-39 164.5 103 81.6
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.2e-38 163.3 114 72.8
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 6.1e-38 161.0 115 72.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 6.1e-38 161.0 110 75.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 110 74.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.0e-37 158.7 110 74.5
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.0e-37 158.7 113 74.3
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 110 73.6
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.6e-36 155.6 130 66.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 7.5e-36 154.1 129 62.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-35 152.5 92 78.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.4e-34 147.9 92 82.6
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.6e-33 146.4 130 64.6
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 5.9e-33 144.4 115 68.7
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.9e-33 144.4 114 68.4
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 7.7e-33 144.1 128 61.7
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 3.8e-32 141.7 113 62.8
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.6e-30 135.2 126 61.1
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.6e-30 135.2 111 66.7
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.6e-30 135.2 124 62.1
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.1e-30 134.4 90 75.6
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.0e-29 132.1 112 66.1
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.0e-28 129.4 83 77.1
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.8e-27 125.6 96 69.8
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 4.1e-26 121.7 121 58.7
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.9e-25 117.9 69 87.0
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.1e-23 113.6 104 62.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.9e-23 112.8 130 56.2
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.6e-22 108.6 72 75.0
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.0e-21 105.5 78 74.4
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 6.4e-19 97.8 99 58.6
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.4e-18 96.7 97 50.5
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.0e-16 90.5 69 72.5
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.3e-16 89.4 46 95.7
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.5e-15 86.7 106 45.3
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.6e-14 82.0 68 60.3
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.9e-08 62.0 66 51.5


User provided reference genes

Program Settings