Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15945 Corchorus olitorius HOM05D001861 ORTHO05D001868 6.4e-123 444.1 229 100.0
Duzib151G0538 Durio zibethinus HOM05D001861 ORTHO05D001868 2.7e-73 279.3 373 47.5
Thecc.04G261800 Theobroma cacao HOM05D001861 ORTHO05D001868 1.4e-69 266.9 375 46.7
Gohir.A10G108300 Gossypium hirsutum HOM05D001861 ORTHO05D001868 5.9e-52 208.4 305 45.2
Gorai.011G179100 Gossypium raimondii HOM05D001861 ORTHO05D001868 1.0e-51 207.6 304 45.7
Gohir.D10G159500 Gossypium hirsutum HOM05D001861 ORTHO05D001868 2.9e-51 206.1 304 45.4
Atru.chr4.1932 Acer truncatum HOM05D001861 ORTHO05D001868 1.1e-37 161.0 366 36.1
Duzib052G1222 Durio zibethinus HOM05D001861 ORTHO05D001868 1.6e-33 147.1 247 42.9
Haze_11444 Corylus avellana HOM05D001861 ORTHO05D001868 1.1e-32 144.4 224 42.0
Hma1.2p1_0112F.1_g054560 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 2.9e-30 136.3 326 32.5
Potri.010G067300 Populus trichocarpa HOM05D001861 ORTHO05D001868 4.1e-29 132.5 359 32.9
Dinv27095 Davidia involucrata HOM05D001861 ORTHO05D001868 6.0e-28 128.6 351 33.3
Manes.15G044200 Manihot esculenta HOM05D001861 ORTHO05D001868 1.0e-27 127.9 357 30.0
TWI09G0555 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 3.9e-27 125.9 115 59.1
Manes.03G160500 Manihot esculenta HOM05D001861 ORTHO05D001868 6.6e-27 125.2 361 31.3
GSVIVG01027898001 Vitis vinifera HOM05D001861 ORTHO05D001868 1.5e-26 124.0 143 49.7
Ciclev10005356m.g Citrus clementina HOM05D001861 ORTHO05D001868 1.9e-26 123.6 369 30.6
Dinv29817 Davidia involucrata HOM05D001861 ORTHO05D001868 3.3e-26 122.9 325 33.2
Potri.008G170600 Populus trichocarpa HOM05D001861 ORTHO05D001868 6.2e-25 118.6 352 30.4
Cfa014768 Carpinus fangiana HOM05D001861 ORTHO05D001868 1.4e-24 117.5 150 44.7
CiPaw.01G179500 Carya illinoinensis HOM05D001861 ORTHO05D001868 3.1e-24 116.3 111 58.6
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 8.9e-24 114.8 366 30.1
CSS0000256 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 3.4e-23 112.8 142 45.1
QL06p020698 Quercus lobata HOM05D001861 ORTHO05D001868 7.6e-23 111.7 109 59.6
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 4.9e-22 109.0 372 28.8
Sp4g15720 Schrenkiella parvula HOM05D001861 ORTHO05D001868 9.2e-21 104.8 228 38.2
Rhsim04G0173700 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.2e-20 104.4 103 52.4
THA.LOC104815999 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 1.6e-20 104.0 258 32.2
Actinidia20830 Actinidia chinensis HOM05D001861 ORTHO05D001868 3.5e-20 102.8 116 50.0
vmacro08539 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 1.3e-19 100.9 105 55.2
Aa31LG5G3890 Aethionema arabicum HOM05D001861 ORTHO05D001868 1.7e-19 100.5 269 34.9
Prupe.1G046000 Prunus persica HOM05D001861 ORTHO05D001868 1.1e-18 97.8 149 43.0
A04p25700 Brassica napus HOM05D001861 ORTHO05D001868 1.9e-18 97.1 240 33.3
MD13G1219300 Malus domestica HOM05D001861 ORTHO05D001868 1.2e-17 94.4 153 43.1
RcHm_v2.0_Chr4g0394781 Rosa chinensis HOM05D001861 ORTHO05D001868 1.6e-17 94.0 106 55.7
AT2G33400 Arabidopsis thaliana HOM05D001861 ORTHO05D001868 2.1e-17 93.6 281 31.7
MD16G1224700 Malus domestica HOM05D001861 ORTHO05D001868 2.8e-17 93.2 281 32.0
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 3.6e-17 92.8 381 27.0
BraA04t18074Z Brassica rapa HOM05D001861 ORTHO05D001868 4.7e-17 92.4 245 31.4
Oeu002285.1 Olea europaea HOM05D001861 ORTHO05D001868 6.2e-17 92.0 85 51.8
CARHR127410 Cardamine hirsuta HOM05D001861 ORTHO05D001868 1.1e-16 91.3 258 31.4
FAN17G0443 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.1e-16 91.3 132 48.5
BcaB06g28683 Brassica carinata HOM05D001861 ORTHO05D001868 1.8e-16 90.5 239 32.2
MELO3C023034.2 Cucumis melo HOM05D001861 ORTHO05D001868 4.0e-16 89.4 108 49.1
Dinv16385 Davidia involucrata HOM05D001861 ORTHO05D001868 5.2e-16 89.0 130 40.0
THA.LOC104801071 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 8.9e-16 88.2 268 31.3
BcaC02g07830 Brassica carinata HOM05D001861 ORTHO05D001868 1.2e-15 87.8 241 32.8
C04p62860 Brassica napus HOM05D001861 ORTHO05D001868 1.2e-15 87.8 241 32.8
CANSAT78G0004 Cannabis sativa HOM05D001861 ORTHO05D001868 1.5e-15 87.4 290 32.4
Thhalv10017083m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 2.0e-15 87.0 257 31.5
BolC4t27769H Brassica oleracea HOM05D001861 ORTHO05D001868 2.6e-15 86.7 243 32.5
FvH4_4g04330 Fragaria vesca HOM05D001861 ORTHO05D001868 2.6e-15 86.7 132 46.2
FAN12G4349 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.6e-15 86.7 132 47.0
TAR633G1161 Trochodendron aralioides HOM05D001861 ORTHO05D001868 2.6e-15 86.7 117 49.6
AL4G29070 Arabidopsis lyrata HOM05D001861 ORTHO05D001868 4.4e-15 85.9 272 30.9
Cc03_g06000 Coffea canephora HOM05D001861 ORTHO05D001868 4.4e-15 85.9 109 42.2
MSTRG.9871 Avicennia marina HOM05D001861 ORTHO05D001868 5.8e-15 85.5 117 46.2
CsaV3_2G012510 Cucumis sativus L. HOM05D001861 ORTHO05D001868 7.6e-15 85.1 108 46.3
FAN22G2180 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.3e-14 84.3 132 46.2
BcaB02g10559 Brassica carinata HOM05D001861 ORTHO05D001868 2.9e-14 83.2 257 31.1
Sabra08G0130400 Salix brachista HOM05D001861 ORTHO05D001868 2.9e-14 83.2 346 29.2
Eucgr.H02966 Eucalyptus grandis HOM05D001861 ORTHO05D001868 4.9e-14 82.4 90 53.3
Prupe.8G218000 Prunus persica HOM05D001861 ORTHO05D001868 4.9e-14 82.4 121 42.1
Peaxi162Scf00033g02833 Petunia axillaris HOM05D001861 ORTHO05D001868 1.1e-13 81.3 216 35.6
SGA_v2.0_scaffold67G22706 Striga asiatica HOM05D001861 ORTHO05D001868 1.1e-13 81.3 109 41.3
Carub.0004s1503 Capsella rubella HOM05D001861 ORTHO05D001868 1.4e-13 80.9 255 29.8
Nn3g19746 Nelumbo nucifera HOM05D001861 ORTHO05D001868 2.4e-13 80.1 164 36.0
Sopen09g028590 Solanum pennellii HOM05D001861 ORTHO05D001868 4.2e-13 79.3 357 25.5
Sed0022466 Sechium edule HOM05D001861 ORTHO05D001868 9.3e-13 78.2 249 31.7
GSVIVG01028395001 Vitis vinifera HOM05D001861 ORTHO05D001868 9.3e-13 78.2 350 26.0
Haze_24681 Corylus avellana HOM05D001861 ORTHO05D001868 1.2e-12 77.8 342 25.7
Glyma.10G189700 Glycine max HOM05D001861 ORTHO05D001868 1.6e-12 77.4 312 27.6
Solyc09g072800.3 Solanum lycopersicum HOM05D001861 ORTHO05D001868 1.6e-12 77.4 361 24.9
BcaC02g11427 Brassica carinata HOM05D001861 ORTHO05D001868 2.1e-12 77.0 258 31.8
C04p15690 Brassica napus HOM05D001861 ORTHO05D001868 2.1e-12 77.0 258 31.8
BolC4t23137H Brassica oleracea HOM05D001861 ORTHO05D001868 2.1e-12 77.0 260 31.2
Manes.13G037900 Manihot esculenta HOM05D001861 ORTHO05D001868 2.1e-12 77.0 121 39.7
Rhsim13G0039200 Rhododendron simsii HOM05D001861 ORTHO05D001868 2.7e-12 76.6 304 28.0
PGSC0003DMG400003789 Solanum tuberosum HOM05D001861 ORTHO05D001868 6.0e-12 75.5 357 24.4
SGA_v2.0_scaffold138G35195 Striga asiatica HOM05D001861 ORTHO05D001868 7.8e-12 75.1 271 29.5
CAN.G220.91 Capsicum annuum HOM05D001861 ORTHO05D001868 1.3e-11 74.3 108 44.4
Lj2A1144T90 Lonicera japonica HOM05D001861 ORTHO05D001868 1.3e-11 74.3 108 38.9
PGR004G1965 Punica granatum HOM05D001861 ORTHO05D001868 3.9e-11 72.8 95 46.3
MD10G1178700 Malus domestica HOM05D001861 ORTHO05D001868 6.6e-11 72.0 122 40.2
Atru.chr5.1809 Acer truncatum HOM05D001861 ORTHO05D001868 2.5e-10 70.1 145 36.6
Hma1.2p1_0273F.1_g109330 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 2.5e-10 70.1 320 27.2
Glyma.20G201200 Glycine max HOM05D001861 ORTHO05D001868 3.3e-10 69.7 110 40.0
Sopen09g033460 Solanum pennellii HOM05D001861 ORTHO05D001868 3.3e-10 69.7 330 26.4
PGSC0003DMG400017200 Solanum tuberosum HOM05D001861 ORTHO05D001868 3.3e-10 69.7 89 47.2
VMungo0720G1440 Vigna mungo HOM05D001861 ORTHO05D001868 4.3e-10 69.3 320 26.6
Phvul.L002544 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 7.3e-10 68.6 110 40.9
MD05G1191900 Malus domestica HOM05D001861 ORTHO05D001868 9.6e-10 68.2 353 24.9
QL09p040988 Quercus lobata HOM05D001861 ORTHO05D001868 9.6e-10 68.2 125 41.6
arahy.Tifrunner.gnm1.ann1.00X5DN Arachis hypogaea HOM05D001861 ORTHO05D001868 1.6e-09 67.4 309 27.5
Lj5g0002325 Lotus japonicus HOM05D001861 ORTHO05D001868 3.6e-09 66.2 71 59.2
A05p12120 Brassica napus HOM05D001861 ORTHO05D001868 4.8e-09 65.9 140 35.0
BraA05t20156Z Brassica rapa HOM05D001861 ORTHO05D001868 4.8e-09 65.9 140 35.0
Nitab4.5_0002709g0080 Nicotiana tabacum HOM05D001861 ORTHO05D001868 4.8e-09 65.9 120 35.8
Ciclev10020148m.g Citrus clementina HOM05D001861 ORTHO05D001868 8.1e-09 65.1 119 37.8
Hund03077 Selenicereus undatus HOM05D001861 ORTHO05D001868 1.1e-08 64.7 104 38.5
CANSAT01G1959 Cannabis sativa HOM05D001861 ORTHO05D001868 1.4e-08 64.3 342 26.6
Thecc.01G252900 Theobroma cacao HOM05D001861 ORTHO05D001868 1.4e-08 64.3 358 25.7
CAN.G1380.1 Capsicum annuum HOM05D001861 ORTHO05D001868 2.4e-08 63.5 365 24.7
MBI07_g20245_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 3.1e-08 63.2 118 39.8
Oeu035746.1 Olea europaea HOM05D001861 ORTHO05D001868 3.1e-08 63.2 127 36.2
TWI12G0903 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 3.1e-08 63.2 140 32.1
Medtr1g073670 Medicago truncatula HOM05D001861 ORTHO05D001868 4.0e-08 62.8 295 26.8
Duzib133G0752 Durio zibethinus HOM05D001861 ORTHO05D001868 5.3e-08 62.4 344 25.9
MD10G1178600 Malus domestica HOM05D001861 ORTHO05D001868 5.3e-08 62.4 124 36.3
Peaxi162Scf00415g00518 Petunia axillaris HOM05D001861 ORTHO05D001868 5.3e-08 62.4 375 24.3
TWI75G1188 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 6.9e-08 62.0 355 21.7
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 9.0e-08 61.6 364 23.6
VMungo0720G0376 Vigna mungo HOM05D001861 ORTHO05D001868 9.0e-08 61.6 329 25.2
HanXRQChr01g0015061 Helianthus annuus HOM05D001861 ORTHO05D001868 1.2e-07 61.2 120 40.0
Nitab4.5_0001051g0050 Nicotiana tabacum HOM05D001861 ORTHO05D001868 1.2e-07 61.2 114 37.7
arahy.Tifrunner.gnm1.ann1.Z5JC91 Arachis hypogaea HOM05D001861 ORTHO05D001868 1.5e-07 60.8 79 49.4
CSS0024374 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 2.0e-07 60.5 112 33.9
CSS0030260 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 2.0e-07 60.5 112 33.9
Glyma.10G039500 Glycine max HOM05D001861 ORTHO05D001868 2.0e-07 60.5 331 26.3
Lsat_1_v5_gn_9_10200 Lactuca sativa HOM05D001861 ORTHO05D001868 2.0e-07 60.5 118 34.7
arahy.Tifrunner.gnm1.ann1.HF22WU Arachis hypogaea HOM05D001861 ORTHO05D001868 2.6e-07 60.1 120 35.0
arahy.Tifrunner.gnm1.ann1.R49I8U Arachis hypogaea HOM05D001861 ORTHO05D001868 2.6e-07 60.1 120 35.0
arahy.Tifrunner.gnm1.ann1.UUI0QM Arachis hypogaea HOM05D001861 ORTHO05D001868 2.6e-07 60.1 120 35.0
Sabra02G0196600 Salix brachista HOM05D001861 ORTHO05D001868 2.6e-07 60.1 126 34.9
Cc01_g17950 Coffea canephora HOM05D001861 ORTHO05D001868 3.4e-07 59.7 114 41.2
Psat6g117160 Pisum sativum HOM05D001861 ORTHO05D001868 5.8e-07 58.9 86 50.0
Nitab4.5_0002389g0030 Nicotiana tabacum HOM05D001861 ORTHO05D001868 9.9e-07 58.2 106 34.0
BcaC04g21063 Brassica carinata HOM05D001861 ORTHO05D001868 1.7e-06 57.4 113 37.2
Ca_09807_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 1.7e-06 57.4 315 27.6
Ca_30488_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 1.7e-06 57.4 315 27.6
DCAR_018512 Daucus carota HOM05D001861 ORTHO05D001868 1.7e-06 57.4 155 30.3
MBI10_g19242_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 1.7e-06 57.4 106 39.6
Sabra10G0040100 Salix brachista HOM05D001861 ORTHO05D001868 1.7e-06 57.4 69 49.3
COL.COLO4_08951 Corchorus olitorius HOM05D001861 ORTHO05D001868 2.9e-06 56.6 344 26.2
Cpa.g.sc44.16 Carica papaya HOM05D001861 ORTHO05D001868 3.8e-06 56.2 75 49.3
Eucgr.A01357 Eucalyptus grandis HOM05D001861 ORTHO05D001868 3.8e-06 56.2 383 22.5
SalBow4G2393 Salvia bowleyana HOM05D001861 ORTHO05D001868 3.8e-06 56.2 173 31.2
Nitab4.5_0003295g0140 Nicotiana tabacum HOM05D001861 ORTHO05D001868 4.9e-06 55.8 382 23.8
TPR.G5651 Trifolium pratense HOM05D001861 ORTHO05D001868 8.4e-06 55.1 112 34.8


User provided reference genes

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