Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15908 Corchorus olitorius HOM05D002652 ORTHO05D002739 6.5e-90 334.0 159 100.0
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.6e-51 204.9 175 58.9
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.3e-50 202.6 191 60.2
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.5e-49 199.9 160 63.1
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.1e-47 192.2 174 56.3
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.3e-29 133.7 156 47.4
RhsimUnG0058300 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.4e-23 113.6 141 41.1
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 4.4e-22 108.6 158 45.6
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 8.4e-21 104.4 164 40.2
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.1e-19 99.8 150 37.3
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.3e-18 97.1 150 34.0
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 1.7e-18 96.7 150 38.7
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 6.6e-18 94.7 173 34.1
Manes.15G046400 Manihot esculenta HOM05D002652 ORTHO05D002739 1.9e-17 93.2 158 35.4
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.3e-17 92.4 159 37.1
Rhsim02G0044400 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.3e-17 91.3 149 33.6
Rhsim02G0046500 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.3e-17 91.3 149 33.6
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 7.3e-17 91.3 149 38.3
Manes.03G158000 Manihot esculenta HOM05D002652 ORTHO05D002739 1.6e-16 90.1 149 38.9
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 2.1e-16 89.7 153 34.6
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.1e-16 89.7 153 34.6
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.6e-16 89.0 149 39.6
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.6e-16 89.0 149 39.6
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.6e-16 89.0 149 38.9
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.8e-16 88.6 168 33.9
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 6.2e-16 88.2 148 36.5
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 8.1e-16 87.8 148 37.8
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 1.1e-15 87.4 147 32.7
Rhsim02G0046300 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.8e-15 86.7 145 34.5
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 2.4e-15 86.3 148 35.8
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.4e-15 86.3 148 34.5
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.1e-15 85.9 177 32.2
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 4.0e-15 85.5 151 35.8
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 4.0e-15 85.5 158 34.2
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 5.3e-15 85.1 159 34.0
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 6.9e-15 84.7 138 35.5
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 6.9e-15 84.7 158 34.2
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 9.0e-15 84.3 145 35.2
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.2e-14 84.0 152 34.2
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 1.2e-14 84.0 151 35.8
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-14 83.6 186 31.7
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 2.0e-14 83.2 173 32.9
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 2.6e-14 82.8 167 37.1
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 3.4e-14 82.4 150 36.0
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 3.4e-14 82.4 145 35.9
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 4.4e-14 82.0 167 37.1
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 5.8e-14 81.6 148 33.1
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 7.6e-14 81.3 148 35.8
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 7.6e-14 81.3 173 32.9
Migut.N00305 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-13 80.5 159 33.3
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-13 80.5 148 33.1
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-13 80.5 149 37.6
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.3e-13 80.5 148 34.5
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.7e-13 80.1 150 32.0
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 1.7e-13 80.1 148 34.5
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 2.2e-13 79.7 128 37.5
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.2e-13 79.7 153 33.3
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 6.4e-13 78.2 148 33.1
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 6.4e-13 78.2 145 33.8
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 8.4e-13 77.8 147 33.3
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 1.1e-12 77.4 183 28.4
Sabra19G0035200 Salix brachista HOM05D002652 ORTHO05D002739 1.4e-12 77.0 150 34.0
Sabra19G0035400 Salix brachista HOM05D002652 ORTHO05D002739 1.4e-12 77.0 150 34.0
TAR636G0198 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.4e-12 77.0 131 35.1
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.4e-12 76.3 156 34.0
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 2.4e-12 76.3 150 34.0
MSTRG.4180 Avicennia marina HOM05D002652 ORTHO05D002739 3.2e-12 75.9 148 33.8
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 3.2e-12 75.9 148 33.8
MSTRG.4182 Avicennia marina HOM05D002652 ORTHO05D002739 3.2e-12 75.9 143 34.3
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 4.2e-12 75.5 150 30.7
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 7.1e-12 74.7 150 33.3
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 9.3e-12 74.3 151 31.1
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 9.3e-12 74.3 153 30.7
THA.LOC104821630 Tarenaya hassleriana HOM05D002652 ORTHO05D002739 9.3e-12 74.3 151 30.5
QL06p021274 Quercus lobata HOM05D002652 ORTHO05D002739 1.2e-11 73.9 151 30.5
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 1.6e-11 73.6 161 30.4
Nn5g27876 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.6e-11 73.6 150 34.0
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 1.6e-11 73.6 159 30.2
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 2.1e-11 73.2 160 31.2
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 2.1e-11 73.2 156 31.4
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.1e-11 73.2 150 30.7
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.1e-11 73.2 150 32.7
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 2.7e-11 72.8 149 32.2
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.7e-11 72.8 150 32.0
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 2.7e-11 72.8 152 32.9
RcHm_v2.0_Chr5g0024661 Rosa chinensis HOM05D002652 ORTHO05D002739 2.7e-11 72.8 159 30.8
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.5e-11 72.4 146 31.5
Migut.N00887 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.6e-11 72.0 149 31.5
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 4.6e-11 72.0 155 31.0
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 4.6e-11 72.0 155 31.0
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 4.6e-11 72.0 147 32.7
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 4.6e-11 72.0 149 31.5
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.6e-11 72.0 149 32.9
RcHm_v2.0_Chr4g0397571 Rosa chinensis HOM05D002652 ORTHO05D002739 4.6e-11 72.0 154 33.1
Migut.N00886 Erythranthe guttata HOM05D002652 ORTHO05D002739 6.0e-11 71.6 146 32.2
Migut.N00884 Erythranthe guttata HOM05D002652 ORTHO05D002739 7.9e-11 71.2 145 29.7
PGR044G0093 Punica granatum HOM05D002652 ORTHO05D002739 7.9e-11 71.2 80 42.5
RcHm_v2.0_Chr4g0395801 Rosa chinensis HOM05D002652 ORTHO05D002739 7.9e-11 71.2 153 30.7
PGR044G1935 Punica granatum HOM05D002652 ORTHO05D002739 1.0e-10 70.9 80 41.2
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.0e-10 70.9 152 32.9
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 1.3e-10 70.5 150 31.3
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.3e-10 70.5 149 30.9
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 1.3e-10 70.5 147 32.0
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 1.7e-10 70.1 162 30.2
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 1.7e-10 70.1 160 25.6
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 1.7e-10 70.1 150 32.0
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.7e-10 70.1 155 31.0
Potri.010G191400 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.7e-10 70.1 145 32.4
RcHm_v2.0_Chr4g0395571 Rosa chinensis HOM05D002652 ORTHO05D002739 1.7e-10 70.1 156 32.1
Duzib147G0896 Durio zibethinus HOM05D002652 ORTHO05D002739 2.3e-10 69.7 149 30.9
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 3.0e-10 69.3 151 32.5
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 3.0e-10 69.3 157 31.2
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 3.9e-10 68.9 166 30.7
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 3.9e-10 68.9 152 30.9
DCAR_002582 Daucus carota HOM05D002652 ORTHO05D002739 3.9e-10 68.9 149 32.9
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 5.1e-10 68.6 159 32.7
Aa31LG9G4240 Aethionema arabicum HOM05D002652 ORTHO05D002739 6.6e-10 68.2 154 29.2
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 6.6e-10 68.2 151 30.5
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 6.6e-10 68.2 151 30.5
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 6.6e-10 68.2 151 30.5
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 6.6e-10 68.2 145 30.3
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.5e-09 67.0 147 31.3
Oeu061866.1 Olea europaea HOM05D002652 ORTHO05D002739 1.5e-09 67.0 132 34.8
Potri.019G026740 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.5e-09 67.0 147 30.6
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 1.9e-09 66.6 148 31.8
MSTRG.4186 Avicennia marina HOM05D002652 ORTHO05D002739 3.3e-09 65.9 159 28.3
Migut.N00883 Erythranthe guttata HOM05D002652 ORTHO05D002739 3.3e-09 65.9 132 28.0
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.3e-09 65.9 152 31.6
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 3.3e-09 65.9 145 31.7
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 4.3e-09 65.5 147 31.3
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.3e-09 65.5 152 32.9
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 5.6e-09 65.1 149 30.9
Aa31LG7G1790 Aethionema arabicum HOM05D002652 ORTHO05D002739 7.3e-09 64.7 169 28.4
Prupe.4G134500 Prunus persica HOM05D002652 ORTHO05D002739 7.3e-09 64.7 159 30.2
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 9.6e-09 64.3 176 28.4
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 9.6e-09 64.3 152 30.9
Migut.N00889 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-08 63.9 145 29.0
FvH4_4g04740 Fragaria vesca HOM05D002652 ORTHO05D002739 1.3e-08 63.9 154 29.9
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 1.6e-08 63.5 151 29.8
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 2.1e-08 63.2 146 30.1
FvH4_3g15020 Fragaria vesca HOM05D002652 ORTHO05D002739 2.1e-08 63.2 151 29.8
FvH4_4g04900 Fragaria vesca HOM05D002652 ORTHO05D002739 2.1e-08 63.2 149 32.9
RcHm_v2.0_Chr4g0395551 Rosa chinensis HOM05D002652 ORTHO05D002739 2.1e-08 63.2 158 31.0
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 2.8e-08 62.8 155 29.0
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 2.8e-08 62.8 153 29.4
FAN17G1721 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.8e-08 62.8 158 29.7
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.8e-08 62.8 119 33.6
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 2.8e-08 62.8 150 30.7
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 3.6e-08 62.4 151 29.1
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 4.8e-08 62.0 150 27.3
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 6.2e-08 61.6 149 29.5
Rhsim02G0044600 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.8e-07 60.1 146 30.1
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 2.4e-07 59.7 128 32.0
FvH4_4g04850 Fragaria vesca HOM05D002652 ORTHO05D002739 3.1e-07 59.3 159 29.6
FAN12G2048 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.1e-07 59.3 159 29.6
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.1e-07 59.3 145 26.2
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 4.0e-07 58.9 152 27.0
CiPaw.01G177100 Carya illinoinensis HOM05D002652 ORTHO05D002739 4.0e-07 58.9 149 31.5
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 4.0e-07 58.9 80 38.8
Rhsim02G0047100 Rhododendron simsii HOM05D062524 ORTHO05D340153 4.0e-07 58.9 124 30.6
Rhsim02G0047000 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.3e-07 58.5 79 35.4
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 6.9e-07 58.2 159 25.2
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 6.9e-07 58.2 151 31.1
RcHm_v2.0_Chr4g0395741 Rosa chinensis HOM05D002652 ORTHO05D002739 9.0e-07 57.8 137 28.5
TAR636G2060 Trochodendron aralioides HOM05D002652 ORTHO05D002739 9.0e-07 57.8 149 26.2
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 9.0e-07 57.8 145 31.0
CANSAT11G2136 Cannabis sativa HOM05D002652 ORTHO05D002739 1.2e-06 57.4 150 27.3
Prupe.6G152600 Prunus persica HOM05D002652 ORTHO05D002739 1.2e-06 57.4 80 33.8
Aa31LG9G4200 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.5e-06 57.0 160 28.1
Duzib151G0998 Durio zibethinus HOM05D002652 ORTHO05D002739 1.5e-06 57.0 151 29.1
Eucgr.H02910 Eucalyptus grandis HOM05D043694 ORTHO05D002739 1.5e-06 57.0 78 34.6
FvH4_4g04760 Fragaria vesca HOM05D002652 ORTHO05D045822 2.0e-06 56.6 151 27.8
Oeu011206.1 Olea europaea HOM05D002652 ORTHO05D002739 2.0e-06 56.6 80 36.2
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 2.0e-06 56.6 150 26.0
QL09p048410 Quercus lobata HOM05D002652 ORTHO05D002739 2.6e-06 56.2 150 29.3
Migut.H01091 Erythranthe guttata HOM05D002652 ORTHO05D002739 3.4e-06 55.8 88 37.5
Oeu011207.1 Olea europaea HOM05D002652 ORTHO05D002739 3.4e-06 55.8 135 29.6
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 5.8e-06 55.1 110 29.1
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 5.8e-06 55.1 80 33.8
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 7.6e-06 54.7 112 30.4
Migut.G00568 Erythranthe guttata HOM05D002652 ORTHO05D002739 7.6e-06 54.7 149 28.9
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.6e-06 54.7 149 28.2
CDE06G1987 Ceratophyllum demersum HOM05D038143 ORTHO05D002739 9.9e-06 54.3 149 28.9


User provided reference genes

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