Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 1.1e-153 546.6 268 100.0
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.4e-129 466.5 243 95.9
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.9e-128 461.1 243 94.7
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.9e-128 461.1 243 94.7
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 5.9e-128 461.1 243 94.7
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 3.8e-127 458.4 243 94.7
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.6e-125 453.0 238 94.5
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.4e-124 449.9 244 92.2
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.4e-124 449.9 244 91.8
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.0e-124 448.7 243 91.8
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 4.0e-124 448.4 243 91.8
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 8.9e-124 447.2 243 91.4
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 3.4e-123 445.3 245 89.8
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 4.4e-123 444.9 239 92.5
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 4.4e-123 444.9 244 91.8
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 5.8e-123 444.5 243 90.5
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.2e-122 442.6 243 89.3
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.2e-122 442.6 243 89.3
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.7e-122 441.8 244 90.6
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.7e-122 441.8 244 89.3
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.7e-122 441.8 244 91.0
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 4.9e-122 441.4 244 91.4
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 6.4e-122 441.0 244 91.0
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 8.3e-122 440.7 244 91.0
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 1.4e-121 439.9 246 90.7
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.4e-121 439.1 243 88.9
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.2e-120 436.8 246 90.7
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.2e-120 436.8 241 89.6
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.6e-120 436.4 244 90.2
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 1.6e-120 436.4 244 90.2
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.0e-120 436.0 243 89.7
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.0e-120 436.0 244 88.9
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 2.7e-120 435.6 243 90.1
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 4.6e-120 434.9 245 88.6
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 6.0e-120 434.5 270 83.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 1.0e-119 433.7 243 89.3
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.0e-119 433.7 245 88.2
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 1.3e-119 433.3 238 90.3
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.3e-119 433.3 244 88.9
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.3e-119 432.6 240 89.2
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.9e-119 431.8 244 88.5
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.1e-118 430.3 244 88.9
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.1e-118 430.3 244 86.5
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.1e-118 430.3 244 86.9
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.5e-118 429.1 244 86.1
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 2.5e-118 429.1 244 85.7
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.5e-118 429.1 243 88.5
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 5.6e-118 427.9 243 89.3
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 5.6e-118 427.9 243 87.2
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 5.6e-118 427.9 244 86.5
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 7.3e-118 427.6 243 87.2
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 9.5e-118 427.2 244 86.1
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.2e-117 426.8 244 88.1
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.6e-117 426.4 239 87.4
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.1e-117 426.0 244 88.1
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 3.6e-117 425.2 235 89.8
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 3.6e-117 425.2 249 87.6
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 6.2e-117 424.5 244 87.7
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 8.0e-117 424.1 240 87.9
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.1e-116 423.7 243 87.2
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.4e-116 423.3 244 86.5
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.8e-116 422.9 244 86.9
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 2.3e-116 422.5 240 88.3
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 2.3e-116 422.5 244 84.8
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 2.3e-116 422.5 243 87.7
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 3.1e-116 422.2 244 87.3
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 3.1e-116 422.2 244 87.3
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 3.1e-116 422.2 246 87.8
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 3.1e-116 422.2 246 87.8
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-116 421.8 244 84.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 6.8e-116 421.0 245 86.1
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.2e-115 420.2 244 84.0
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.5e-115 419.9 245 84.5
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.5e-115 419.9 244 84.0
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.5e-115 419.9 244 84.0
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 2.6e-115 419.1 228 90.4
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 2.6e-115 419.1 243 85.6
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.4e-115 418.7 244 86.9
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 3.4e-115 418.7 240 86.2
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.8e-115 417.9 244 86.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 5.8e-115 417.9 248 85.9
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.7e-114 416.4 285 76.1
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 6.4e-114 414.5 244 87.3
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 8.3e-114 414.1 243 85.6
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.4e-113 412.5 246 83.7
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 5.4e-113 411.4 234 88.0
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 1.2e-112 410.2 244 84.4
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 1.2e-112 410.2 244 84.4
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.2e-112 410.2 243 85.2
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.2e-112 410.2 234 87.6
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.6e-112 409.8 244 84.0
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.6e-112 409.8 243 83.5
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.7e-112 409.1 246 85.0
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.7e-112 409.1 246 85.0
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.7e-112 409.1 243 84.0
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 3.5e-112 408.7 244 84.4
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 4.6e-112 408.3 218 91.7
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 1.7e-111 406.4 246 85.4
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 3.3e-110 402.1 237 86.1
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 4.3e-110 401.7 264 78.8
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.2e-109 400.2 234 88.0
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-109 400.2 245 85.3
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.6e-109 399.8 243 85.2
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.6e-109 399.8 243 85.2
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.1e-108 397.1 244 82.4
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-108 396.7 244 82.0
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.4e-108 396.7 226 88.1
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.8e-108 396.4 244 82.4
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 1.7e-106 389.8 224 87.5
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 9.2e-105 384.0 250 79.2
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 2.7e-104 382.5 227 83.3
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 7.8e-104 380.9 241 79.7
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.3e-103 380.2 239 80.3
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 8.6e-103 377.5 207 90.3
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 4.7e-101 371.7 226 83.2
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 4.7e-101 371.7 222 83.8
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-100 369.8 225 83.1
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 6.8e-100 367.9 233 81.1
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 2.0e-99 366.3 196 90.8
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 3.2e-97 359.0 227 81.1
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.0e-96 354.8 215 81.4
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 6.0e-96 354.8 248 73.8
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 1.0e-95 354.0 226 79.6
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.4e-92 343.6 209 79.9
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 1.2e-91 340.5 179 92.2
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 9.9e-91 337.4 291 63.9
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.3e-90 337.0 214 78.0
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 1.9e-89 333.2 250 73.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 2.4e-89 332.8 215 77.7
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 4.2e-89 332.0 243 72.4
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.4e-89 331.6 176 92.0
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.1e-87 325.1 216 76.4
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 1.5e-83 313.5 204 73.0
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 4.6e-80 302.0 234 66.7
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 3.0e-79 299.3 208 72.6
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 7.4e-78 294.7 217 72.4
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 1.2e-75 287.3 232 69.8
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 2.6e-75 286.2 204 67.2
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 9.9e-75 284.3 166 85.5
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.9e-74 282.0 375 47.5
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.5e-70 269.6 166 81.9
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 4.8e-69 265.4 153 84.3
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 6.3e-61 238.4 209 61.2
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.5e-59 233.8 160 71.9
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 4.2e-57 225.7 207 53.6
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.7e-53 213.8 114 93.9
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 1.8e-52 210.3 123 87.8
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 1.7e-50 203.8 120 83.3
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 3.2e-49 199.5 114 88.6
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.6e-48 196.1 108 90.7
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 4.7e-48 195.7 115 83.5
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 3.1e-44 183.0 103 86.4
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.5e-43 180.6 103 85.4
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.7e-42 177.2 102 87.3
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 8.8e-39 164.9 106 81.1
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 1.7e-37 160.6 96 83.3
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.8e-36 157.1 92 84.8
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 1.2e-35 154.5 97 77.3
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 1.3e-34 151.0 80 93.8
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 4.7e-32 142.5 105 70.5
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 1.3e-29 134.4 85 76.5
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.7e-29 132.9 77 88.3
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 5.0e-26 122.5 76 76.3
Zm00001eb125510 Zea mays HOM05D002996 ORTHO05D003536 4.2e-25 119.4 70 80.0
TPR.G1005 Trifolium pratense HOM05D002996 ORTHO05D003536 1.8e-23 114.0 79 72.2
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 7.0e-20 102.1 93 59.1
HanXRQChr06g0182761 Helianthus annuus HOM05D002996 ORTHO05D003536 1.2e-19 101.3 56 82.1
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 8.0e-16 88.6 49 93.9
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 8.9e-15 85.1 48 91.7
Cpa.g.c35938 Carica papaya HOM05D002996 ORTHO05D003536 1.5e-14 84.3 47 93.6
PSO407G0426 Papaver somniferum HOM05D002996 ORTHO05D003536 2.8e-13 80.1 48 83.3
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 4.9e-13 79.3 81 55.6
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.3e-13 78.6 80 52.5
Lsat_1_v5_gn_8_84061 Lactuca sativa HOM05D002292 ORTHO05D003256 4.1e-12 76.3 42 88.1
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.2e-12 75.1 49 71.4
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 1.2e-11 74.7 41 85.4
Ah.03g135660 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.7e-11 73.6 42 88.1
Lsat_1_v5_gn_9_17080 Lactuca sativa HOM05D002996 ORTHO05D003536 2.3e-10 70.5 47 76.6
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 5.0e-10 69.3 42 76.2
Hma1.2p1_0017F.1_g011790 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 5.6e-09 65.9 35 94.3
Hma1.2p1_0284F.1_g113805 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 5.6e-09 65.9 35 94.3
Zm00001eb156170 Zea mays HOM05D002996 ORTHO05D025899 1.2e-08 64.7 39 79.5
Zm00001eb156180 Zea mays HOM05D002996 ORTHO05D004756 1.2e-08 64.7 39 79.5
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 2.1e-08 63.9 42 76.2
Nn3g16619 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.0e-07 61.6 35 94.3


User provided reference genes

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