Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.2e-100 369.0 190 100.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 3.9e-81 305.1 190 81.6
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 9.8e-77 290.4 192 81.2
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.3e-76 290.0 192 80.7
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.9e-76 288.9 183 83.1
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.4e-75 286.6 192 80.2
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.6e-71 273.1 187 73.3
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.4e-70 270.0 181 74.0
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 6.8e-70 267.7 188 72.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 8.4e-68 260.8 184 68.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 7.1e-67 257.7 179 71.5
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.1e-66 256.1 181 71.3
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 2.7e-66 255.8 211 64.5
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 6.0e-66 254.6 179 69.3
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 1.0e-65 253.8 174 73.6
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 3.9e-65 251.9 203 64.5
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.1e-64 250.4 185 71.4
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 1.5e-64 250.0 177 71.2
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.5e-64 250.0 185 69.7
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 4.3e-64 248.4 188 68.1
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 5.6e-64 248.1 185 68.6
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 5.6e-64 248.1 183 69.9
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 1.2e-63 246.9 180 67.8
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 2.1e-63 246.1 182 68.7
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 1.8e-62 243.0 184 69.0
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.4e-62 242.7 188 63.3
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 2.4e-62 242.7 187 62.6
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.5e-61 240.0 181 68.5
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.4e-61 238.8 185 64.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 4.4e-61 238.4 184 69.6
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 5.8e-61 238.0 185 64.9
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 7.6e-61 237.7 187 64.2
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 7.6e-61 237.7 175 69.7
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 7.6e-61 237.7 185 64.3
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 9.9e-61 237.3 189 64.6
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 8.4e-60 234.2 190 63.2
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 1.4e-59 233.4 178 66.3
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.4e-59 233.4 189 63.0
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.9e-59 233.0 189 65.6
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 3.2e-59 232.3 198 58.6
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.1e-59 231.1 190 61.1
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 7.1e-59 231.1 188 63.8
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 7.1e-59 231.1 231 55.8
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 9.3e-59 230.7 190 61.6
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.6e-58 229.9 176 67.6
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 3.5e-58 228.8 190 60.5
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 6.0e-58 228.0 184 62.0
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.3e-57 226.9 163 71.8
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.7e-57 226.5 175 64.6
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.7e-57 226.5 182 64.8
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 1.7e-57 226.5 191 60.2
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 2.3e-57 226.1 181 65.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.9e-57 225.3 195 59.0
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 6.6e-57 224.6 185 60.5
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 6.6e-57 224.6 195 60.0
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 8.7e-57 224.2 186 64.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 1.5e-56 223.4 191 59.7
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 1.9e-56 223.0 191 62.3
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 9.6e-56 220.7 186 60.8
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 4.8e-55 218.4 188 61.2
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.1e-54 217.2 174 63.2
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.1e-54 217.2 173 62.4
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.1e-54 217.2 202 59.4
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.0e-54 215.3 211 55.5
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 6.9e-54 214.5 173 61.3
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 9.0e-54 214.2 179 63.1
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.5e-53 213.4 189 59.8
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.0e-53 213.0 178 59.0
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 4.4e-53 211.8 176 62.5
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 4.4e-53 211.8 178 59.0
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 9.9e-53 210.7 188 60.1
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 3.8e-52 208.8 178 61.2
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 6.4e-52 208.0 182 62.1
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 6.4e-52 208.0 185 57.8
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.9e-51 206.5 182 61.5
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 9.3e-51 204.1 188 55.9
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.2e-50 203.8 170 61.8
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 6.0e-50 201.4 169 61.5
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.0e-49 200.7 189 57.1
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 3.0e-49 199.1 185 55.7
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 8.7e-49 197.6 180 58.9
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.3e-48 195.7 164 62.8
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 5.6e-48 194.9 170 59.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 7.3e-48 194.5 170 58.8
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.3e-47 193.7 170 58.8
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.3e-47 193.7 170 59.4
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.6e-47 193.4 170 58.8
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.1e-47 193.0 186 55.9
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 4.8e-47 191.8 186 55.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 1.1e-46 190.7 177 58.8
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.1e-46 189.1 171 58.5
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 6.9e-46 188.0 171 57.9
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 9.9e-45 184.1 216 47.7
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.7e-44 183.3 178 55.6
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.9e-43 179.9 170 58.2
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 3.2e-43 179.1 170 57.6
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 3.2e-43 179.1 170 57.6
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 9.3e-43 177.6 170 57.1
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 2.1e-42 176.4 170 57.1
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.1e-42 176.4 170 57.1
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 4.6e-42 175.3 187 51.9
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-41 172.6 170 54.1
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 5.1e-41 171.8 158 57.0
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.9e-40 169.9 136 62.5
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 3.2e-35 152.5 94 76.6
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.1e-32 144.1 118 63.6
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.5e-32 143.7 127 60.6
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.3e-32 142.5 180 50.0
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 1.3e-31 140.6 89 75.3
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 6.3e-31 138.3 185 42.2
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 3.8e-20 102.4 179 38.5
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 4.2e-19 99.0 99 58.6
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.2e-18 97.4 177 35.6
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 7.4e-16 88.2 197 29.9
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 4.5e-13 79.0 115 40.9
COL.COLO4_35607 Corchorus olitorius HOM05D006799 ORTHO05D008391 4.5e-13 79.0 40 97.5
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.7e-07 60.5 39 69.2


User provided reference genes

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