Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 0.0e+00 6800.7 3619 100.0
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.8e-17 97.8 431 24.4
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 2.3e-17 97.4 420 25.5
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.0e-16 94.4 423 24.1
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 4.4e-16 93.2 422 22.5
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.7e-16 92.8 453 24.7
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 5.7e-16 92.8 428 24.8
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 5.7e-16 92.8 451 24.2
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 2.2e-15 90.9 429 23.5
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 3.7e-15 90.1 440 22.5
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 3.7e-15 90.1 431 23.0
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.3e-15 89.0 434 24.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 8.3e-15 89.0 424 22.6
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 8.3e-15 89.0 477 22.9
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 8.3e-15 89.0 426 24.2
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.1e-14 88.6 429 24.9
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.4e-14 88.2 421 24.9
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-14 88.2 429 24.7
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 2.4e-14 87.4 436 24.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 3.1e-14 87.0 422 23.5
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 3.1e-14 87.0 446 24.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 3.1e-14 87.0 421 24.0
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 4.1e-14 86.7 427 24.4
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.1e-14 86.7 465 23.2
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.1e-14 86.7 465 23.2
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 4.1e-14 86.7 433 24.0
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 7.0e-14 85.9 429 24.2
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 7.0e-14 85.9 476 25.2
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 7.0e-14 85.9 428 24.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 9.2e-14 85.5 434 25.3
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 9.2e-14 85.5 421 23.3
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 1.2e-13 85.1 444 25.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.2e-13 85.1 423 25.8
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.2e-13 85.1 439 23.2
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.6e-13 84.7 426 23.2
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.0e-13 84.3 451 24.2
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.0e-13 84.3 425 24.7
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 2.7e-13 84.0 435 23.7
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 2.7e-13 84.0 426 24.4
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 2.7e-13 84.0 425 24.9
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 4.5e-13 83.2 445 24.7
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 7.8e-13 82.4 207 31.4
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.0e-12 82.0 420 24.8
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.0e-12 82.0 420 24.8
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.0e-12 82.0 420 24.8
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.0e-12 82.0 205 27.8
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 1.3e-12 81.6 422 23.0
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.3e-12 81.6 430 24.9
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.3e-12 81.6 430 24.9
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.7e-12 81.3 434 23.5
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 1.7e-12 81.3 420 24.0
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.3e-12 80.9 432 24.1
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 2.3e-12 80.9 205 27.8
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.3e-12 80.9 197 29.9
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 2.9e-12 80.5 433 24.2
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 2.9e-12 80.5 423 25.1
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 2.9e-12 80.5 436 22.9
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 3.8e-12 80.1 423 25.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.8e-12 80.1 206 29.6
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 5.0e-12 79.7 434 25.1
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 5.0e-12 79.7 441 25.2
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 6.6e-12 79.3 429 23.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 8.6e-12 79.0 424 23.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 8.6e-12 79.0 443 24.6
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.1e-11 78.6 79 45.6
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.5e-11 78.2 207 29.0
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.5e-11 78.2 442 24.4
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 2.5e-11 77.4 430 24.0
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 3.3e-11 77.0 430 23.5
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 5.6e-11 76.3 208 29.3
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 5.6e-11 76.3 208 29.8
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 9.5e-11 75.5 438 25.1
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 9.5e-11 75.5 203 29.6
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.2e-10 75.1 423 24.3
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.2e-10 75.1 57 66.7
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.2e-10 75.1 445 24.3
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 1.6e-10 74.7 423 23.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.1e-10 74.3 438 23.1
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.1e-10 74.3 207 28.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 2.1e-10 74.3 427 23.7
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.6e-10 73.6 201 30.3
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 4.7e-10 73.2 443 23.7
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.7e-10 73.2 206 29.1
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 6.1e-10 72.8 207 27.5
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 8.0e-10 72.4 431 23.4
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.0e-09 72.0 204 28.4
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.4e-09 71.6 77 44.2
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 1.8e-09 71.2 104 37.5
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.8e-09 71.2 435 23.0
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.3e-09 70.9 285 24.2
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.3e-09 70.9 198 29.3
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.0e-09 70.5 204 26.0
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 3.0e-09 70.5 431 22.5
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 6.8e-09 69.3 58 55.2
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 6.8e-09 69.3 435 22.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 8.9e-09 68.9 61 52.5
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 8.9e-09 68.9 457 22.3
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.2e-08 68.6 215 30.7
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.2e-08 68.6 226 27.9
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.2e-08 68.6 222 26.1
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 2.6e-08 67.4 461 22.8
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 2.6e-08 67.4 56 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.4e-08 66.6 56 55.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 9.8e-08 65.5 208 28.8
Cpa.g.sc129.24 Carica papaya HOM05D000620 ORTHO05D000537 1.3e-07 65.1 120 30.8
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.3e-07 65.1 307 23.1
Potri.003G148400 Populus trichocarpa HOM05D000620 ORTHO05D000537 1.7e-07 64.7 119 35.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.7e-07 64.7 214 28.5
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.7e-07 63.5 246 28.9
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 6.4e-07 62.8 414 24.2
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.3e-07 62.4 270 26.3
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 8.3e-07 62.4 415 23.1
FAN16G1899 Fragaria x ananassa HOM05D000620 ORTHO05D000537 1.1e-06 62.0 184 29.9
Sabra03G0108100 Salix brachista HOM05D000620 ORTHO05D000537 1.1e-06 62.0 109 35.8
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-06 60.8 270 25.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.2e-06 58.9 270 25.6
HanXRQChr03g0080931 Helianthus annuus HOM05D000620 ORTHO05D000537 9.2e-06 58.9 178 29.8
RcHm_v2.0_Chr5g0019201 Rosa chinensis HOM05D000620 ORTHO05D000537 9.2e-06 58.9 158 29.1


User provided reference genes

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