Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.5e-194 682.6 327 100.0
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.8e-62 243.8 322 43.2
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 3.7e-55 219.5 439 35.5
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 5.9e-45 185.7 416 35.3
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 1.7e-44 184.1 380 35.0
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 2.2e-44 183.7 449 30.7
COL.COLO4_14934 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.8e-44 183.0 437 34.3
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 4.7e-42 176.0 470 29.1
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 1.4e-41 174.5 432 30.8
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 3.9e-41 172.9 446 30.7
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.3e-40 169.9 411 33.3
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 1.7e-39 167.5 396 31.8
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 2.2e-39 167.2 442 31.2
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 3.7e-39 166.4 376 31.9
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 4.8e-39 166.0 412 30.8
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 4.8e-39 166.0 448 31.0
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.8e-38 164.1 472 30.1
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 5.3e-38 162.5 477 29.4
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 5.3e-38 162.5 433 29.8
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 5.3e-38 162.5 487 29.4
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 9.1e-38 161.8 334 33.8
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 9.1e-38 161.8 440 31.6
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 2.6e-37 160.2 433 30.3
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 3.5e-37 159.8 430 30.2
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.5e-37 159.5 445 30.3
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.2e-36 157.1 437 29.1
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.2e-36 157.1 464 28.4
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 2.5e-35 153.7 401 30.2
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 9.4e-35 151.8 442 28.3
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.1e-34 150.6 477 27.9
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.7e-34 149.4 478 28.7
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 6.1e-34 149.1 381 29.9
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.1e-34 149.1 474 27.4
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-33 147.9 417 30.0
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-33 147.9 241 37.8
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 3.0e-33 146.7 379 29.6
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 5.2e-33 146.0 480 26.5
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.7e-33 145.6 499 27.1
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-32 144.4 501 27.1
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 7.4e-32 142.1 478 26.4
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.3e-31 141.4 474 26.8
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 1.7e-31 141.0 391 28.4
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.2e-31 140.6 496 26.8
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.2e-31 140.6 474 26.8
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 6.3e-31 139.0 234 40.2
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-30 137.9 196 44.4
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 1.6e-29 134.4 458 28.4
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 2.0e-29 134.0 380 29.5
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 5.9e-29 132.5 373 27.3
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 7.7e-29 132.1 373 26.8
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 2.9e-28 130.2 353 28.6
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 2.9e-28 130.2 393 27.5
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 5.0e-28 129.4 372 26.6
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.1e-27 128.3 455 26.2
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 1.1e-27 128.3 337 28.8
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.5e-27 127.9 395 26.8
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 1.5e-27 127.9 290 34.8
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.2e-27 126.7 429 28.0
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 4.2e-27 126.3 438 28.5
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 4.2e-27 126.3 402 30.1
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 5.5e-27 125.9 387 27.4
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 9.4e-27 125.2 392 28.6
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 3.6e-26 123.2 338 27.8
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 8.0e-26 122.1 430 26.0
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.0e-25 121.7 444 26.6
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 2.3e-25 120.6 367 27.2
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 3.0e-25 120.2 383 26.9
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 8.8e-25 118.6 385 27.0
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 2.0e-24 117.5 346 27.2
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.0e-24 117.5 346 27.2
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.0e-24 117.5 346 27.2
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 2.0e-24 117.5 317 29.0
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 2.6e-24 117.1 347 30.8
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 9.8e-24 115.2 329 27.1
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 1.7e-23 114.4 370 26.2
Gohir.D05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-23 113.6 266 33.1
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 3.7e-23 113.2 331 26.3
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 3.7e-23 113.2 378 25.4
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 4.8e-23 112.8 389 27.2
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.3e-23 112.1 208 38.0
COL.COLO4_14929 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.1e-22 111.7 319 30.1
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 1.4e-22 111.3 373 24.4
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 7.0e-22 109.0 379 25.9
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 9.1e-22 108.6 371 25.9
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 3.5e-21 106.7 391 25.3
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 3.5e-21 106.7 235 33.2
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 3.5e-21 106.7 317 25.6
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 7.7e-21 105.5 392 25.8
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 7.7e-21 105.5 326 27.6
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 1.3e-20 104.8 389 26.0
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 1.7e-20 104.4 391 25.1
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 1.7e-20 104.4 186 35.5
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 2.2e-20 104.0 372 26.9
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 2.9e-20 103.6 268 29.5
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 2.9e-20 103.6 370 24.3
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 3.8e-20 103.2 375 24.8
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 3.8e-20 103.2 145 40.7
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 5.0e-20 102.8 186 36.0
Ca_30311_v3 Cicer arietinum L. HOM05D003242 ORTHO05D003593 8.5e-20 102.1 169 35.5
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 1.1e-19 101.7 240 33.8
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 1.9e-19 100.9 188 33.5
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 1.9e-19 100.9 188 33.5
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 1.9e-19 100.9 381 25.2
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 4.2e-19 99.8 179 33.5
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 7.2e-19 99.0 394 25.9
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.2e-18 98.2 338 25.4
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 1.6e-18 97.8 388 25.8
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.6e-18 97.8 332 25.3
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 3.6e-18 96.7 376 24.5
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 6.1e-18 95.9 182 33.0
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 8.0e-18 95.5 182 33.0
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.0e-17 95.1 241 30.3
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 1.8e-17 94.4 183 34.4
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 2.3e-17 94.0 182 33.0
Hma1.2p1_0192F.1_g083590 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 3.0e-17 93.6 213 34.7
Thecc.10G045600 Theobroma cacao HOM05D003242 ORTHO05D003593 4.0e-17 93.2 179 36.9
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.2e-17 92.8 159 37.7
Gohir.D05G300333 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.8e-17 92.4 137 38.7
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 2.0e-16 90.9 182 33.0
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 2.6e-16 90.5 389 24.4
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.7e-16 89.4 399 25.8
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 5.7e-16 89.4 324 24.7
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 7.5e-16 89.0 159 36.5
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 9.8e-16 88.6 127 36.2
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 9.8e-16 88.6 338 26.3
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 2.2e-15 87.4 179 33.0
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 2.2e-15 87.4 338 26.6
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 2.8e-15 87.0 177 33.9
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 3.7e-15 86.7 335 27.2
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 8.3e-15 85.5 229 30.1
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 5.4e-14 82.8 396 24.0
Lalb_Chr04g0257911 Lupinus albus HOM05D003242 ORTHO05D003593 5.4e-14 82.8 135 34.1
Ciclev10033483m.g Citrus clementina HOM05D003242 ORTHO05D003593 7.0e-14 82.4 98 45.9
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 7.0e-14 82.4 184 31.0
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.2e-13 81.6 200 30.0
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 1.2e-13 81.6 318 24.8
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.0e-13 80.9 119 43.7
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 3.5e-13 80.1 194 32.5
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 4.5e-13 79.7 178 31.5
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.8e-12 76.6 90 44.4
Thecc.10G048900 Theobroma cacao HOM05D003242 ORTHO05D003593 3.8e-12 76.6 107 41.1
CiPaw.09G187700 Carya illinoinensis HOM05D003242 ORTHO05D003593 5.0e-12 76.3 133 35.3
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.6e-12 75.9 377 25.2
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.5e-11 74.7 376 25.0
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 2.5e-11 73.9 325 23.1
COL.COLO4_14872 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.3e-11 73.6 372 23.9
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 3.3e-11 73.6 325 23.1
Gorai.009G318000 Gossypium raimondii HOM05D003242 ORTHO05D003593 7.2e-11 72.4 121 36.4
Cc06_g03080 Coffea canephora HOM05D003242 ORTHO05D003593 9.5e-11 72.0 193 28.0
Psat3g184400 Pisum sativum HOM05D003242 ORTHO05D003593 1.6e-10 71.2 113 38.1
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.1e-10 70.9 92 43.5
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 2.8e-10 70.5 334 21.9
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.7e-10 69.7 91 45.1
Dinv35647 Davidia involucrata HOM05D003242 ORTHO05D003593 2.3e-09 67.4 206 28.2
Duzib128G1376 Durio zibethinus HOM05D003242 ORTHO05D003593 3.0e-09 67.0 324 23.1
COL.COLO4_26933 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.0e-09 66.6 90 41.1
FAN05G4479 Fragaria x ananassa HOM05D000015 ORTHO05D000249 4.0e-09 66.6 229 30.6
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 4.0e-09 66.6 219 29.2
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 5.2e-09 66.2 133 30.8
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 5.2e-09 66.2 193 26.9
FAN05G3965 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.8e-09 65.9 229 30.1
FAN02G1018 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.6e-08 63.9 228 28.5
FAN02G1180 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.6e-08 63.9 228 28.5
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 5.7e-08 62.8 181 27.1
FvH4_6g05140 Fragaria vesca HOM05D000576 ORTHO05D000368 7.5e-08 62.4 228 28.5
PGR004G0625 Punica granatum HOM05D003242 ORTHO05D003593 7.5e-08 62.4 129 29.5
FvH4_6g14500 Fragaria vesca HOM05D003242 ORTHO05D003593 1.3e-07 61.6 201 30.8
FAN14G3638 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.3e-07 61.6 201 30.8
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 1.3e-07 61.6 204 27.9
Thecc.05G046000 Theobroma cacao HOM05D003242 ORTHO05D003593 1.7e-07 61.2 337 22.8
COL.COLO4_14871 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.7e-07 60.1 378 21.7
FvH4_6g05620 Fragaria vesca HOM05D000576 ORTHO05D000368 3.7e-07 60.1 228 28.1
FAN05G5020 Fragaria x ananassa HOM05D003242 ORTHO05D003593 6.4e-07 59.3 201 29.9
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 8.3e-07 58.9 90 36.7
Actinidia13120 Actinidia chinensis HOM05D003242 ORTHO05D003593 2.4e-06 57.4 128 28.9
AUR62015691 Chenopodium quinoa HOM05D000689 ORTHO05D000015 2.4e-06 57.4 213 30.5
AUR62020512 Chenopodium quinoa HOM05D000051 ORTHO05D000015 3.2e-06 57.0 206 30.6
COL.COLO4_14931 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.1e-06 56.6 73 43.8
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.1e-06 56.6 90 35.6
C08p27960 Brassica napus HOM05D000051 ORTHO05D000015 7.0e-06 55.8 42 50.0
BolC8t50408H Brassica oleracea HOM05D000051 ORTHO05D000015 7.0e-06 55.8 42 50.0
FvH4_6g05160 Fragaria vesca HOM05D000576 ORTHO05D000368 7.0e-06 55.8 240 28.3
Prupe.7G247200 Prunus persica HOM05D000576 ORTHO05D000368 9.2e-06 55.5 226 26.1


User provided reference genes

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