Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_14929 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.7e-171 605.9 303 100.0
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.8e-63 245.4 329 47.1
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 2.1e-60 236.9 457 38.7
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 4.0e-48 196.1 376 40.4
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 5.1e-27 125.9 372 33.1
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 2.0e-23 114.0 143 45.5
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 3.4e-23 113.2 152 44.1
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.3e-22 111.3 319 30.1
COL.COLO4_14931 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.5e-21 107.1 149 46.3
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 4.2e-21 106.3 361 26.6
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 1.2e-20 104.8 149 43.6
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 2.7e-20 103.6 119 42.0
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 2.7e-20 103.6 272 30.9
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 4.6e-20 102.8 357 27.7
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 6.1e-20 102.4 161 41.6
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 7.9e-20 102.1 179 35.8
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 1.0e-19 101.7 117 45.3
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.4e-19 101.3 145 44.1
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 3.0e-19 100.1 110 47.3
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 8.8e-19 98.6 119 44.5
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 5.7e-18 95.9 183 37.2
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.4e-18 95.5 121 41.3
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 9.7e-18 95.1 113 44.2
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-17 94.7 202 32.7
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.2e-17 94.0 198 34.8
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.2e-17 94.0 110 44.5
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-17 93.6 127 44.1
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 3.7e-17 93.2 187 35.3
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 3.7e-17 93.2 110 45.5
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 4.8e-17 92.8 158 38.6
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.3e-17 92.4 146 41.8
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.3e-17 92.4 163 35.6
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.3e-17 92.4 146 41.8
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-16 91.3 180 33.3
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-16 91.3 114 42.1
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-16 91.3 351 26.2
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 1.4e-16 91.3 164 36.6
Thecc.10G048900 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-16 91.3 194 33.5
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 1.8e-16 90.9 116 43.1
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.8e-16 90.9 351 26.2
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.4e-16 90.5 152 39.5
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-16 90.1 151 38.4
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 3.1e-16 90.1 113 43.4
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 4.1e-16 89.7 161 36.6
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 5.3e-16 89.4 163 36.8
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.3e-16 89.4 155 38.7
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 9.1e-16 88.6 133 39.1
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.2e-15 88.2 140 37.9
COL.COLO4_14934 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.5e-15 87.8 374 27.5
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 1.5e-15 87.8 154 39.0
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 1.5e-15 87.8 160 33.8
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.0e-15 87.4 147 36.7
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 2.0e-15 87.4 154 39.0
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.6e-15 87.0 125 37.6
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.5e-15 86.3 159 35.8
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.5e-15 86.3 152 38.2
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 1.0e-14 85.1 203 31.5
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 1.0e-14 85.1 154 39.0
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 1.3e-14 84.7 116 38.8
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 1.3e-14 84.7 158 34.2
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 2.2e-14 84.0 183 31.7
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 3.8e-14 83.2 191 33.0
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.8e-14 83.2 111 44.1
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 3.8e-14 83.2 173 34.1
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 5.0e-14 82.8 116 37.1
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 5.0e-14 82.8 173 35.3
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.0e-14 82.8 114 41.2
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 8.5e-14 82.0 321 26.5
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 1.4e-13 81.3 183 29.5
COL.COLO4_26933 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.2e-13 79.0 121 33.9
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 7.2e-13 79.0 95 45.3
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 9.4e-13 78.6 111 41.4
Ciclev10033929m.g Citrus clementina HOM05D003242 ORTHO05D003593 9.4e-13 78.6 159 35.8
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 9.4e-13 78.6 112 41.1
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-12 77.8 174 32.8
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 1.6e-12 77.8 170 33.5
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 2.1e-12 77.4 167 31.1
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 3.6e-12 76.6 118 34.7
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 4.7e-12 76.3 115 39.1
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 6.1e-12 75.9 183 32.2
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 6.1e-12 75.9 212 30.7
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 7.9e-12 75.5 183 30.1
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 7.9e-12 75.5 201 30.8
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.0e-11 75.1 293 29.7
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.4e-11 74.7 130 33.1
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 1.8e-11 74.3 162 32.1
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 2.3e-11 73.9 111 37.8
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 3.0e-11 73.6 109 38.5
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 3.9e-11 73.2 106 37.7
Ciclev10033483m.g Citrus clementina HOM05D003242 ORTHO05D003593 3.9e-11 73.2 115 40.9
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 6.7e-11 72.4 105 48.6
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 6.7e-11 72.4 116 34.5
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 6.7e-11 72.4 161 30.4
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 1.1e-10 71.6 115 36.5
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.1e-10 71.6 115 36.5
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.1e-10 71.6 115 36.5
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 1.1e-10 71.6 152 32.9
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 1.1e-10 71.6 193 30.1
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.5e-10 71.2 152 36.2
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 2.0e-10 70.9 166 31.3
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.0e-10 70.9 97 45.4
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 2.6e-10 70.5 167 28.7
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.6e-10 70.5 112 35.7
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 3.3e-10 70.1 115 36.5
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 3.3e-10 70.1 115 35.7
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 3.3e-10 70.1 117 32.5
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 3.3e-10 70.1 191 33.0
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 4.4e-10 69.7 146 32.2
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 7.4e-10 68.9 92 39.1
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 1.7e-09 67.8 111 36.0
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 1.7e-09 67.8 172 30.2
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 4.8e-09 66.2 112 33.9
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 6.3e-09 65.9 113 34.5
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 6.3e-09 65.9 113 34.5
Psat3g184400 Pisum sativum HOM05D003242 ORTHO05D003593 1.1e-08 65.1 107 31.8
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-08 65.1 120 37.5
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 1.4e-08 64.7 165 30.3
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 2.4e-08 63.9 113 31.9
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 2.4e-08 63.9 115 34.8
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 2.4e-08 63.9 113 31.9
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 2.4e-08 63.9 115 34.8
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 2.4e-08 63.9 112 32.1
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 4.1e-08 63.2 115 33.9
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 4.1e-08 63.2 113 31.9
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 4.1e-08 63.2 115 33.9
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 5.3e-08 62.8 160 30.6
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 5.3e-08 62.8 171 31.6
GSVIVG01016606001 Vitis vinifera HOM05D003242 ORTHO05D003593 5.3e-08 62.8 88 40.9
Thhalv10001182m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 7.0e-08 62.4 138 31.2
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 1.5e-07 61.2 112 34.8
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 3.4e-07 60.1 164 29.3
Actinidia37828 Actinidia chinensis HOM05D000312 ORTHO05D000493 4.5e-07 59.7 70 47.1
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 4.5e-07 59.7 116 33.6
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 4.5e-07 59.7 116 34.5
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 7.7e-07 58.9 101 30.7
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 7.7e-07 58.9 159 31.4
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 1.0e-06 58.5 97 38.1
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 1.3e-06 58.2 101 31.7
Migut.J00150 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.7e-06 57.8 86 39.5
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.7e-06 57.8 65 44.6
Psat7g105360 Pisum sativum HOM05D001243 ORTHO05D000843 2.9e-06 57.0 190 25.3
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.9e-06 57.0 202 26.2
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 5.0e-06 56.2 190 29.5
Lj9C648G6 Lonicera japonica HOM05D000051 ORTHO05D000015 5.0e-06 56.2 101 36.6
Manes.06G096266 Manihot esculenta HOM05D000312 ORTHO05D000493 6.5e-06 55.8 161 27.3
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 6.5e-06 55.8 96 37.5
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 8.5e-06 55.5 95 36.8


User provided reference genes

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