Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.4e-187 659.4 329 100.0
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 6.6e-145 517.7 329 80.2
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.6e-143 513.1 329 79.6
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 4.0e-142 508.4 329 78.4
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 8.9e-142 507.3 329 78.4
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 7.0e-139 497.7 329 76.9
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 3.9e-137 491.9 329 76.6
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 2.3e-113 412.9 329 64.4
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 3.3e-112 409.1 329 63.8
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 9.6e-112 407.5 323 65.0
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.3e-108 397.1 331 61.3
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.4e-107 393.7 323 61.3
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 1.9e-107 393.3 330 60.3
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.4e-107 392.9 330 62.1
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 3.2e-107 392.5 318 62.9
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 2.7e-106 389.4 324 60.2
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 3.9e-105 385.6 330 58.8
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.1e-104 384.0 330 60.6
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.9e-104 383.3 327 59.6
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 5.6e-104 381.7 328 59.5
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 9.6e-104 380.9 329 60.2
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 6.9e-102 374.8 324 62.7
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 6.9e-102 374.8 324 59.3
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 2.0e-101 373.2 329 57.8
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 5.8e-101 371.7 321 59.8
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 7.6e-101 371.3 325 59.1
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.6e-101 371.3 325 59.1
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 9.3e-99 364.4 329 57.1
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 4.6e-98 362.1 329 58.1
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 1.0e-97 360.9 329 58.1
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 2.3e-97 359.8 329 58.1
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.3e-97 359.8 329 58.1
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 3.0e-97 359.4 329 58.1
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 3.9e-97 359.0 330 55.5
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 2.5e-96 356.3 329 58.4
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 2.5e-96 356.3 330 57.3
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 7.4e-96 354.8 333 55.3
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 9.6e-96 354.4 329 57.8
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 9.6e-96 354.4 329 58.4
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 2.1e-95 353.2 332 56.0
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 2.8e-95 352.8 331 55.6
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 4.8e-95 352.1 331 55.9
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 1.1e-94 350.9 326 57.7
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 5.3e-94 348.6 326 55.2
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 6.9e-94 348.2 330 54.2
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.5e-93 347.1 329 57.1
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.5e-93 347.1 332 55.1
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 2.6e-93 346.3 329 55.6
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 3.4e-93 345.9 387 48.1
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 5.8e-93 345.1 329 56.8
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 5.8e-93 345.1 330 54.2
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 9.9e-93 344.4 328 57.0
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 1.3e-92 344.0 329 53.5
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 6.4e-92 341.7 329 55.9
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 8.4e-92 341.3 329 56.2
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 8.4e-92 341.3 329 56.2
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 1.4e-91 340.5 328 57.3
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 2.4e-91 339.7 337 51.6
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 4.2e-91 339.0 329 53.5
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 5.5e-91 338.6 329 55.0
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.6e-90 337.0 329 56.5
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 2.1e-90 336.7 332 53.6
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 2.1e-90 336.7 329 55.6
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 7.9e-90 334.7 317 57.4
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.3e-89 334.0 329 54.1
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.8e-89 333.6 329 52.0
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 1.8e-89 333.6 327 52.0
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 3.0e-89 332.8 329 54.4
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 3.9e-89 332.4 329 54.7
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 5.1e-89 332.0 330 53.0
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 8.7e-89 331.3 328 54.0
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 4.3e-88 328.9 329 52.6
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 5.6e-88 328.6 334 51.8
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 7.4e-88 328.2 329 52.0
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 9.6e-88 327.8 329 52.0
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.3e-87 327.4 329 54.1
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 2.8e-87 326.2 329 52.9
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 1.4e-86 323.9 326 53.4
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 2.4e-86 323.2 332 52.7
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 6.9e-86 321.6 331 52.0
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 3.4e-85 319.3 334 50.6
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 2.2e-84 316.6 329 49.8
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 3.8e-84 315.8 325 51.4
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 2.5e-83 313.2 329 48.9
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 3.2e-83 312.8 329 52.3
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 3.2e-83 312.8 331 51.4
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 4.6e-82 308.9 301 53.5
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.0e-81 307.8 323 50.2
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 3.1e-78 296.2 330 48.5
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 2.9e-76 289.7 329 50.2
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 1.4e-75 287.3 329 46.5
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 1.7e-71 273.9 305 46.9
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.1e-70 269.6 213 62.4
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 5.3e-70 268.9 340 43.5
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 9.1e-70 268.1 340 43.5
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.4e-65 254.2 329 46.5
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 7.4e-64 248.4 332 43.4
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 3.7e-63 246.1 293 45.4
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.4e-62 243.4 200 62.5
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 4.1e-62 242.7 252 54.8
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 4.7e-58 229.2 271 47.6
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.0e-57 228.0 201 55.7
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 1.4e-46 191.0 240 42.1
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.7e-45 186.8 195 54.4
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 7.0e-38 162.2 210 44.8
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-35 154.8 235 43.0
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 2.8e-34 150.2 129 57.4
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 8.9e-33 145.2 326 29.1
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 5.4e-30 136.0 121 57.9
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 9.5e-27 125.2 125 47.2
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 2.2e-23 114.0 120 50.0
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 3.7e-23 113.2 131 46.6
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 5.4e-22 109.4 102 53.9
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 7.0e-22 109.0 131 45.0
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 7.0e-22 109.0 131 45.0
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 3.0e-20 103.6 134 45.5
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 3.9e-20 103.2 68 69.1
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 8.6e-20 102.1 67 68.7
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 2.5e-19 100.5 120 45.8
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 4.3e-19 99.8 68 66.2
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 2.1e-18 97.4 237 28.7
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 2.8e-18 97.1 262 33.6
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 3.6e-18 96.7 120 44.2
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 1.0e-12 78.6 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 3.4e-08 63.5 210 29.0


User provided reference genes

Program Settings