Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12916 Corchorus olitorius HOM05D000098 ORTHO05D001079 3.8e-48 194.5 99 100.0
Duzib052G0550 Durio zibethinus HOM05D000098 ORTHO05D001079 2.3e-21 105.5 68 72.1
Duzib052G1038 Durio zibethinus HOM05D000098 ORTHO05D001079 4.4e-20 101.3 68 72.1
Duzib132G0243 Durio zibethinus HOM05D000098 ORTHO05D001079 2.2e-19 99.0 68 70.6
Thecc.02G040200 Theobroma cacao HOM05D000098 ORTHO05D001079 2.2e-19 99.0 68 66.2
Gohir.A06G070400 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.4e-18 96.3 68 67.6
Gohir.D06G069000 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.4e-18 96.3 68 66.2
Gorai.010G080600 Gossypium raimondii HOM05D000098 ORTHO05D001079 3.2e-18 95.1 68 64.7
Thecc.06G033000 Theobroma cacao HOM05D000098 ORTHO05D001079 1.2e-14 83.2 69 58.0
Thecc.05G150700 Theobroma cacao HOM05D000098 ORTHO05D001079 1.8e-13 79.3 69 56.5
Thecc.02G040100 Theobroma cacao HOM05D000098 ORTHO05D001079 8.9e-13 77.0 68 57.4
Carub.0001s1753 Capsella rubella HOM05D000098 ORTHO05D001079 7.5e-12 73.9 68 51.5
Manes.10G130900 Manihot esculenta HOM05D000098 ORTHO05D001079 9.9e-12 73.6 68 48.5
AL1G30160 Arabidopsis lyrata HOM05D000098 ORTHO05D001079 1.7e-11 72.8 68 50.0
THA.LOC104812199 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 4.9e-11 71.2 70 48.6
AT1G17800 Arabidopsis thaliana HOM05D000098 ORTHO05D001079 6.4e-11 70.9 68 50.0
Thhalv10019549m.g Eutrema salsugineum HOM05D000098 ORTHO05D001079 2.4e-10 68.9 67 47.8
Sp1g15880 Schrenkiella parvula HOM05D000098 ORTHO05D001079 2.4e-10 68.9 68 50.0
Manes.10G131100 Manihot esculenta HOM05D000098 ORTHO05D001079 4.1e-10 68.2 68 44.1
Sabra07G0085600 Salix brachista HOM05D000098 ORTHO05D001079 4.1e-10 68.2 69 50.7
THA.LOC104809814 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 7.1e-10 67.4 68 50.0
BcaB03g15388 Brassica carinata HOM05D000098 ORTHO05D001079 2.1e-09 65.9 70 47.1
Cpa.g.sc754.1 Carica papaya HOM05D000098 ORTHO05D001079 2.1e-09 65.9 71 46.5
CARHR018410 Cardamine hirsuta HOM05D000098 ORTHO05D001079 6.0e-09 64.3 67 47.8
Cpa.g.sc1142.3 Carica papaya HOM05D000098 ORTHO05D001079 6.0e-09 64.3 71 45.1
COL.COLO4_17884 Corchorus olitorius HOM05D000098 ORTHO05D001079 6.0e-09 64.3 71 46.5
Potri.007G104600 Populus trichocarpa HOM05D000098 ORTHO05D001079 6.0e-09 64.3 69 47.8
Thhalv10009632m.g Eutrema salsugineum HOM05D000098 ORTHO05D001079 1.7e-08 62.8 68 41.2
Sp5g22960 Schrenkiella parvula HOM05D000098 ORTHO05D001079 1.7e-08 62.8 68 45.6
Os02g0256800 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 2.3e-08 62.4 66 47.0
QL09p029125 Quercus lobata HOM05D000098 ORTHO05D001079 2.3e-08 62.4 64 48.4
Sp5g22950 Schrenkiella parvula HOM05D000098 ORTHO05D001079 3.0e-08 62.0 68 45.6
Gohir.D04G171700 Gossypium hirsutum HOM05D000098 ORTHO05D001079 3.9e-08 61.6 64 46.9
Gorai.012G160600 Gossypium raimondii HOM05D000098 ORTHO05D001079 3.9e-08 61.6 64 46.9
Sopen01g046830 Solanum pennellii HOM05D000098 ORTHO05D001079 5.1e-08 61.2 64 51.6
A07p32270 Brassica napus HOM05D000098 ORTHO05D001079 6.6e-08 60.8 70 44.3
C06p38090 Brassica napus HOM05D000098 ORTHO05D001079 6.6e-08 60.8 70 44.3
BolC6t38906H Brassica oleracea HOM05D000098 ORTHO05D001079 6.6e-08 60.8 70 44.3
BraA07t30852Z Brassica rapa HOM05D000098 ORTHO05D001079 6.6e-08 60.8 70 44.3
AUR62031979 Chenopodium quinoa HOM05D000098 ORTHO05D001079 6.6e-08 60.8 65 44.6
Lalb_Chr16g0379411 Lupinus albus HOM05D000098 ORTHO05D001079 6.6e-08 60.8 64 48.4
Zm00001eb423780 Zea mays HOM05D000098 ORTHO05D001079 6.6e-08 60.8 64 45.3
Gohir.A04G126800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 8.6e-08 60.5 64 45.3
Gorai.006G101800 Gossypium raimondii HOM05D000098 ORTHO05D001079 8.6e-08 60.5 65 44.6
Solyc01g104390.2 Solanum lycopersicum HOM05D000098 ORTHO05D001079 8.6e-08 60.5 64 51.6
BcaC08g46014 Brassica carinata HOM05D000098 ORTHO05D001079 1.1e-07 60.1 70 42.9
Duzib133G1052 Durio zibethinus HOM05D000098 ORTHO05D001079 1.1e-07 60.1 65 41.5
Ah.05g169420 Amaranthus hybridus HOM05D000098 ORTHO05D001079 1.5e-07 59.7 64 43.8
CANSAT11G1808 Cannabis sativa HOM05D000098 ORTHO05D001079 1.5e-07 59.7 64 42.2
Gohir.D09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.5e-07 59.7 65 44.6
CiPaw.15G023100 Carya illinoinensis HOM05D000098 ORTHO05D001079 1.9e-07 59.3 64 43.8
MBI19_g10617_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D001079 1.9e-07 59.3 62 43.5
Os03g0709300 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 1.9e-07 59.3 64 45.3
Ah.05g167480 Amaranthus hybridus HOM05D000098 ORTHO05D001079 2.5e-07 58.9 67 40.3
Phvul.006G212825 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 2.5e-07 58.9 64 46.9
Phvul.006G212900 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 2.5e-07 58.9 64 46.9
EL10Ac1g01417 Beta vulgaris HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 43.8
ClCG08G006340 Citrullus lanatus HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 45.3
MBI12_g14642_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 43.8
MD15G1418000 Malus domestica HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 45.3
Prupe.8G016000 Prunus persica HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 45.3
PGR044G1194 Punica granatum HOM05D000098 ORTHO05D001079 3.3e-07 58.5 65 47.7
Thecc.06G031700 Theobroma cacao HOM05D000098 ORTHO05D001079 3.3e-07 58.5 64 46.9
Ciclev10002840m.g Citrus clementina HOM05D000098 ORTHO05D001079 4.3e-07 58.2 64 43.8
Duzib132G0132 Durio zibethinus HOM05D000098 ORTHO05D001079 4.3e-07 58.2 64 43.8
Gorai.009G251600 Gossypium raimondii HOM05D000098 ORTHO05D001079 4.3e-07 58.2 64 43.8
MBI12_g12676_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D001079 4.3e-07 58.2 64 43.8
Manes.18G085600 Manihot esculenta HOM05D000098 ORTHO05D001079 4.3e-07 58.2 66 45.5
VMungo0540G0797 Vigna mungo HOM05D000098 ORTHO05D001079 4.3e-07 58.2 64 45.3
MELO3C008424.2 Cucumis melo HOM05D000098 ORTHO05D001079 7.3e-07 57.4 64 43.8
Os03g0850900 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 7.3e-07 57.4 65 44.6
Phvul.006G212800 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 7.3e-07 57.4 64 39.1
CSS0035356 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 43.8
CSS0036152 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 43.8
Dinv04655 Davidia involucrata HOM05D000098 ORTHO05D001079 9.5e-07 57.0 65 43.1
Duzib093G0394 Durio zibethinus HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 42.2
PGSC0003DMG400023782 Solanum tuberosum HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 48.4
PGSC0003DMG400023783 Solanum tuberosum HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 48.4
PGSC0003DMG400023784 Solanum tuberosum HOM05D000098 ORTHO05D001079 9.5e-07 57.0 64 48.4
Cc02_g22330 Coffea canephora HOM05D000098 ORTHO05D001079 1.2e-06 56.6 62 41.9
Migut.B00670 Erythranthe guttata HOM05D000098 ORTHO05D001079 1.2e-06 56.6 64 42.2
Phvul.006G212925 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 1.2e-06 56.6 64 39.1
HPP92_009440 Vanilla planifolia HOM05D000098 ORTHO05D001079 1.2e-06 56.6 62 43.5
GSVIVG01010003001 Vitis vinifera HOM05D000098 ORTHO05D001079 1.2e-06 56.6 64 40.6
GSVIVG01023000001 Vitis vinifera HOM05D000098 ORTHO05D001079 1.2e-06 56.6 60 45.0
CAN.G1305.37 Capsicum annuum HOM05D000098 ORTHO05D001079 1.6e-06 56.2 65 47.7
AUR62013468 Chenopodium quinoa HOM05D000098 ORTHO05D001079 1.6e-06 56.2 64 42.2
Lalb_Chr22g0357021 Lupinus albus HOM05D000098 ORTHO05D001079 1.6e-06 56.2 63 50.8
QL11p032143 Quercus lobata HOM05D000098 ORTHO05D001079 1.6e-06 56.2 64 39.1
Atru.chr13.1656 Acer truncatum HOM05D000098 ORTHO05D001079 2.1e-06 55.8 64 42.2
Actinidia30085 Actinidia chinensis HOM05D000098 ORTHO05D001079 2.1e-06 55.8 65 41.5
CAN.G564.1 Capsicum annuum HOM05D000098 ORTHO05D001079 2.1e-06 55.8 64 48.4
HanXRQChr00c0095g0571661 Helianthus annuus HOM05D000098 ORTHO05D001079 2.1e-06 55.8 65 43.1
HanXRQChr11g0340371 Helianthus annuus HOM05D000098 ORTHO05D001079 2.1e-06 55.8 65 43.1
Solyc01g104380.3 Solanum lycopersicum HOM05D000098 ORTHO05D001079 2.1e-06 55.8 64 46.9
TPR.G6245 Trifolium pratense HOM05D000098 ORTHO05D001079 2.1e-06 55.8 64 43.8
ATR0564G203 Amborella trichopoda HOM05D000098 ORTHO05D001079 2.8e-06 55.5 66 42.4
EL10Ac1g01418 Beta vulgaris HOM05D000098 ORTHO05D001079 2.8e-06 55.5 65 43.1
CiPaw.05G043200 Carya illinoinensis HOM05D000098 ORTHO05D001079 2.8e-06 55.5 64 39.1
AUR62026804 Chenopodium quinoa HOM05D000098 ORTHO05D001079 2.8e-06 55.5 64 43.8
Gohir.A09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.8e-06 55.5 65 41.5
Gohir.D09G085900 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.8e-06 55.5 65 41.5
Gorai.006G102000 Gossypium raimondii HOM05D000098 ORTHO05D001079 2.8e-06 55.5 65 41.5
Potri.001G209300 Populus trichocarpa HOM05D000098 ORTHO05D001079 2.8e-06 55.5 64 42.2
Potri.002G241500 Populus trichocarpa HOM05D000098 ORTHO05D001079 2.8e-06 55.5 66 39.4
QL11p032113 Quercus lobata HOM05D000098 ORTHO05D001079 2.8e-06 55.5 64 42.2
Ciclev10022827m.g Citrus clementina HOM05D000098 ORTHO05D001079 3.6e-06 55.1 65 43.1
Medtr3g089005 Medicago truncatula HOM05D000098 ORTHO05D001079 3.6e-06 55.1 64 42.2
Os02g0257100 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 3.6e-06 55.1 62 43.5
Phvul.002G250700 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 3.6e-06 55.1 64 42.2
THA.LOC104820032 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 3.6e-06 55.1 64 42.2
COL.COLO4_11876 Corchorus olitorius HOM05D000098 ORTHO05D001079 4.7e-06 54.7 65 41.5
QL02p098545 Quercus lobata HOM05D000098 ORTHO05D001079 4.7e-06 54.7 64 39.1
QL02p098548 Quercus lobata HOM05D000098 ORTHO05D001079 4.7e-06 54.7 64 39.1
Sopen01g046820 Solanum pennellii HOM05D000098 ORTHO05D001079 4.7e-06 54.7 64 45.3
EL10Ac1g01421 Beta vulgaris HOM05D000098 ORTHO05D001079 6.2e-06 54.3 64 39.1
CSS0004169 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 6.2e-06 54.3 65 38.5
Gohir.A05G241000 Gossypium hirsutum HOM05D000098 ORTHO05D001079 6.2e-06 54.3 64 40.6
MBI19_g47129_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D001079 6.2e-06 54.3 64 39.1
Zm00001eb418270 Zea mays HOM05D000098 ORTHO05D001079 6.2e-06 54.3 61 42.6
DCAR_029240 Daucus carota HOM05D000098 ORTHO05D001079 8.1e-06 53.9 64 40.6
Os03g0259100 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 8.1e-06 53.9 65 44.6
Sabra01G0161600 Salix brachista HOM05D000098 ORTHO05D001079 8.1e-06 53.9 64 40.6
SGA_v2.0_scaffold110G31295 Striga asiatica HOM05D000098 ORTHO05D001079 8.1e-06 53.9 61 44.3
unitig_27.g24939 Utricularia gibba HOM05D000098 ORTHO05D001079 8.1e-06 53.9 66 40.9


User provided reference genes

Program Settings