Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.2e-188 662.1 332 100.0
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-152 543.1 332 83.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-151 539.7 329 83.3
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.5e-146 521.9 332 82.2
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.6e-146 521.5 332 82.2
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-144 516.2 332 81.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.1e-134 482.3 281 87.2
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.9e-130 467.6 327 74.0
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.4e-126 456.1 319 74.3
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.8e-124 448.7 329 71.4
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-123 447.2 329 71.1
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.2e-123 445.7 321 70.7
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 9.3e-123 444.1 326 70.6
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.3e-121 439.5 336 70.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.0e-121 439.1 268 83.2
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.1e-120 437.2 322 73.0
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-120 437.2 324 70.1
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.5e-120 436.8 329 70.2
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.8e-118 429.9 319 72.4
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 2.2e-116 422.9 318 68.6
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.9e-116 422.5 332 66.9
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.9e-116 421.8 332 69.9
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.9e-114 414.5 329 66.3
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 8.7e-113 411.0 319 68.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 3.3e-112 409.1 288 72.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.3e-111 407.1 300 71.0
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.4e-110 403.7 303 69.3
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.1e-110 402.5 340 64.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.1e-110 402.5 323 66.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.1e-110 402.5 323 66.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 6.9e-110 401.4 303 70.6
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.5e-109 400.2 341 64.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.6e-109 399.4 324 65.7
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.5e-109 398.7 313 69.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.9e-109 398.3 319 66.8
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.6e-109 397.9 322 66.8
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.6e-109 397.9 319 67.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.3e-108 397.1 317 65.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.3e-108 397.1 320 65.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.3e-108 397.1 322 66.5
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.3e-108 397.1 321 63.9
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 8.5e-108 394.4 324 64.2
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 8.5e-108 394.4 305 66.2
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.5e-107 392.9 252 79.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.2e-107 392.5 337 63.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.2e-107 392.1 254 78.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 7.2e-107 391.3 325 65.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 9.3e-107 391.0 325 62.8
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.2e-106 390.6 327 63.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.6e-106 390.2 318 67.0
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.7e-106 389.4 329 65.7
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.0e-105 387.5 311 67.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.8e-105 386.7 301 67.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.3e-105 386.3 332 65.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.0e-105 386.0 320 63.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 6.7e-105 384.8 320 64.1
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 6.7e-105 384.8 319 63.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.5e-104 383.6 302 66.2
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.5e-104 383.6 330 60.3
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-104 383.6 292 68.5
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.7e-104 381.7 333 60.7
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 7.4e-104 381.3 302 67.2
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 7.4e-104 381.3 317 64.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 7.4e-104 381.3 295 68.5
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.8e-103 379.4 327 61.8
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-102 377.5 324 62.3
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.1e-102 377.5 324 62.3
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.8e-102 376.7 300 65.3
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.1e-102 375.9 331 60.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 9.1e-102 374.4 300 64.7
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.5e-101 373.6 299 64.9
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.6e-101 372.9 296 67.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 3.4e-101 372.5 300 64.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 4.5e-101 372.1 299 64.9
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.9e-101 371.7 333 59.5
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 7.7e-101 371.3 331 60.7
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.0e-100 370.9 317 60.9
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.7e-100 370.2 332 60.2
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.7e-100 370.2 325 64.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.2e-100 369.8 288 67.4
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-100 369.4 299 66.9
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-100 369.4 299 66.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.9e-100 369.4 315 61.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 2.5e-99 366.3 330 57.3
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.2e-99 364.8 328 60.4
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.6e-98 363.6 329 59.9
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.7e-98 362.8 325 58.2
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 7.9e-98 361.3 325 60.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.0e-97 360.9 304 61.8
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.8e-97 360.1 321 59.2
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.9e-97 359.0 327 58.7
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 6.7e-97 358.2 328 61.3
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 8.8e-97 357.8 323 59.4
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.8e-97 357.8 333 57.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-96 357.5 328 57.6
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-96 357.5 333 57.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.6e-96 356.3 317 60.3
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.6e-96 356.3 333 57.4
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.3e-96 355.9 328 56.7
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-95 353.6 327 57.8
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-95 353.6 328 56.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.7e-95 352.4 359 57.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.4e-94 349.7 293 61.8
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-93 347.1 336 57.1
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.6e-93 346.3 316 57.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.4e-93 345.9 329 57.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 3.4e-93 345.9 257 70.4
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.9e-91 340.1 272 65.8
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.7e-89 331.6 337 53.7
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.0e-88 330.1 316 57.0
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.3e-88 329.3 350 53.7
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 5.7e-88 328.6 342 54.1
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.4e-88 328.2 322 55.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 9.7e-88 327.8 301 58.5
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.3e-87 327.4 322 54.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.7e-87 325.9 322 54.0
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.7e-87 325.9 318 54.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.1e-86 322.8 307 57.0
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.2e-85 320.9 291 59.5
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.5e-85 319.3 299 55.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.9e-85 318.5 343 52.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.0e-84 317.8 284 59.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.7e-84 317.0 309 55.7
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.7e-84 317.0 338 54.1
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.9e-84 316.2 295 56.3
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.5e-84 315.1 294 57.1
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.5e-83 313.9 283 56.5
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 7.2e-83 311.6 327 51.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.1e-82 310.1 327 51.7
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 4.7e-82 308.9 328 52.4
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 6.1e-82 308.5 327 50.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.0e-81 307.8 327 50.5
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-81 307.4 328 52.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.4e-81 307.4 313 53.7
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.3e-81 306.6 327 50.5
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.0e-81 306.2 272 57.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.0e-81 306.2 331 50.2
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.5e-80 303.9 300 53.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.5e-80 303.9 320 52.2
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 2.6e-80 303.1 320 50.9
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 7.5e-80 301.6 302 52.6
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-79 300.8 328 50.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.3e-79 300.8 290 54.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.4e-78 296.6 298 52.3
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 5.3e-78 295.4 324 52.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.6e-77 293.9 277 58.5
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.5e-77 292.4 295 53.9
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.2e-72 277.7 250 57.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 4.1e-70 269.2 288 50.3
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.0e-68 264.6 246 56.5
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.8e-68 262.7 242 55.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.5e-68 261.9 158 79.7
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.5e-67 260.8 286 49.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 5.7e-64 248.8 230 59.6
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.2e-63 246.9 156 75.6
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-63 246.5 145 88.3
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.0e-61 240.4 237 57.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.3e-59 232.6 180 62.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.3e-59 232.6 154 74.7
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.9e-55 219.9 279 49.5
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 3.2e-54 216.5 223 56.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.6e-53 214.2 241 49.4
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.7e-50 202.6 207 56.5
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-45 188.0 210 50.0
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 2.9e-39 166.8 128 73.4
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 4.1e-38 162.9 261 38.7
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.3e-36 157.1 228 42.5
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.8e-34 150.2 88 81.8
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-27 126.7 76 80.3
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 5.6e-27 125.9 87 71.3
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 2.6e-24 117.1 83 72.3
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 7.6e-24 115.5 75 69.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.7e-23 114.4 76 75.0
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 7.3e-19 99.0 125 42.4
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.4e-14 84.0 56 73.2
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.3e-07 61.6 134 36.6


User provided reference genes

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