Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 4.1e-292 1007.3 493 100.0
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 6.5e-282 973.4 487 97.1
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.9e-281 971.8 487 96.9
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 7.2e-281 969.9 487 96.7
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.2e-280 969.1 487 96.5
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.7e-280 967.2 487 95.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-279 965.7 487 96.3
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.3e-279 964.9 486 96.9
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.0e-279 964.1 487 96.3
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 2.6e-278 961.4 487 95.9
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.4e-278 960.7 487 95.1
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.5e-275 951.0 487 94.0
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 5.9e-275 950.3 487 94.3
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.8e-274 947.6 487 94.9
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.1e-273 946.0 487 94.5
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.9e-273 945.3 487 94.3
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 9.5e-273 943.0 487 93.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.1e-272 941.8 487 93.0
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 2.1e-272 941.8 486 94.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 3.6e-272 941.0 487 93.0
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 6.1e-272 940.3 487 93.6
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 8.0e-272 939.9 487 92.6
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.0e-271 939.5 486 93.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.4e-271 939.1 484 93.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.4e-271 939.1 487 92.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.8e-271 938.7 487 92.4
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 3.0e-271 937.9 484 93.2
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.5e-270 935.6 487 92.8
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 4.4e-270 934.1 484 92.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.7e-270 933.7 486 93.8
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 5.7e-270 933.7 487 91.8
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 7.5e-270 933.3 492 92.1
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 9.8e-270 932.9 484 91.9
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 2.2e-269 931.8 484 92.4
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.2e-269 931.8 480 92.7
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.9e-269 931.4 486 92.6
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.7e-269 931.0 487 92.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.3e-269 929.9 486 92.2
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.4e-268 929.1 485 92.6
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.8e-268 928.7 484 91.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.8e-268 928.7 487 92.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.4e-268 928.3 483 91.9
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 4.1e-268 927.5 487 91.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.6e-267 925.6 484 91.9
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.6e-267 925.6 487 91.2
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 2.0e-267 925.2 485 92.0
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.7e-267 924.9 485 91.8
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 5.9e-267 923.7 487 91.2
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 7.8e-267 923.3 486 91.4
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.7e-266 922.2 487 92.2
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 2.3e-266 921.8 486 90.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.3e-266 921.8 485 90.7
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.0e-266 921.4 486 91.8
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 3.9e-266 921.0 489 90.2
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.6e-266 920.2 486 90.5
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 6.6e-266 920.2 487 91.2
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 8.6e-266 919.8 488 91.0
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 8.6e-266 919.8 487 91.0
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 8.6e-266 919.8 484 90.9
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.5e-265 919.1 487 90.8
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.5e-265 919.1 484 91.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.5e-265 919.1 485 90.9
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.9e-265 918.7 484 91.3
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 3.3e-265 917.9 482 91.5
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 3.3e-265 917.9 487 91.0
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 3.3e-265 917.9 484 90.9
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.3e-265 917.9 486 90.5
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 5.6e-265 917.1 486 91.2
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 5.6e-265 917.1 487 90.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 7.3e-265 916.8 487 90.8
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 7.3e-265 916.8 486 90.1
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 7.3e-265 916.8 486 90.1
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 9.5e-265 916.4 486 90.3
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 9.5e-265 916.4 487 90.8
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 9.5e-265 916.4 489 90.4
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 90.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.2e-264 916.0 486 90.5
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.2e-264 916.0 474 93.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 90.8
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 2.1e-264 915.2 486 90.9
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.1e-264 915.2 484 90.7
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.1e-264 915.2 493 90.5
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.8e-264 914.8 487 91.0
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 4.7e-264 914.1 487 90.6
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 487 90.6
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.3e-263 911.8 487 90.8
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 6.8e-263 910.2 479 91.6
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 8.9e-263 909.8 487 90.3
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 8.9e-263 909.8 489 90.4
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.2e-262 909.4 486 90.7
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-262 909.4 489 89.6
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 2.6e-262 908.3 484 90.7
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 2.6e-262 908.3 480 90.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.6e-262 908.3 489 89.4
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.4e-262 907.5 477 91.8
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 9.8e-262 906.4 486 89.7
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.7e-261 905.6 485 89.7
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 6.4e-261 903.7 453 95.8
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.4e-260 902.5 460 95.2
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.2e-260 901.4 488 89.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 5.4e-260 900.6 487 91.0
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 9.2e-260 899.8 485 89.9
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.0e-259 898.7 460 94.3
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 2.7e-259 898.3 479 91.2
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.0e-258 896.3 483 89.4
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.3e-258 896.0 483 89.4
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.6e-256 889.0 460 93.0
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.9e-250 867.8 460 91.3
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.9e-249 865.5 484 87.2
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.3e-249 864.4 482 88.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.2e-247 857.4 482 86.9
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 2.6e-246 855.1 480 84.4
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 5.8e-246 854.0 475 86.7
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.1e-243 845.5 439 90.9
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 8.7e-242 840.1 434 90.1
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.1e-241 839.7 408 97.1
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.1e-239 831.6 407 96.1
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 3.4e-238 828.2 457 84.5
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 7.6e-238 827.0 406 95.1
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.2e-237 825.5 405 95.1
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 4.6e-235 817.8 407 93.9
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.4e-231 806.2 486 82.1
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.1e-228 796.6 433 85.5
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 3.5e-227 791.6 384 97.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 4.9e-221 771.2 421 83.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.1e-219 765.8 436 82.1
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 4.6e-219 764.6 422 82.9
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.9e-218 761.5 392 92.9
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.2e-211 740.0 393 91.3
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.6e-211 739.6 481 77.5
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 6.1e-195 684.5 372 88.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.6e-193 679.1 346 93.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-186 654.8 486 70.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-183 647.1 395 74.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.5e-180 636.7 315 94.9
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-177 626.7 488 67.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-175 620.5 486 67.3
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.5e-173 610.9 486 66.5
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.8e-168 595.9 331 87.9
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.5e-150 535.8 279 90.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.9e-144 516.2 351 74.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 3.5e-126 456.1 276 75.0
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 9.6e-116 421.4 203 97.0
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.1e-98 364.8 222 80.2
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.1e-98 364.8 180 92.2
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.1e-94 350.5 172 96.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.1e-93 345.9 171 95.3
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.4e-87 327.8 485 42.9
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.4e-77 294.7 146 95.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 5.2e-69 266.2 146 86.3
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 9.1e-66 255.4 164 79.3
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.7e-64 251.1 127 93.7
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.5e-63 248.1 127 88.2
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 6.1e-62 242.7 147 82.3
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.5e-55 219.5 259 44.8
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.4e-52 210.3 127 82.7
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-51 208.4 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.3e-51 205.7 102 94.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.8e-38 164.1 108 72.2
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 9.8e-36 155.6 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 4.9e-35 153.3 77 94.8
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.9e-35 153.3 77 94.8
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 5.2e-29 133.3 69 94.2
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 5.2e-29 133.3 197 38.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-29 133.3 71 90.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-27 127.9 69 87.0
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.9e-27 126.7 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.9e-27 126.7 65 92.3
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.2e-26 122.5 66 87.9
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.1e-25 121.3 66 86.4
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.8e-22 110.9 83 67.5
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 6.8e-21 106.3 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.9e-21 105.9 67 71.6
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 8.6e-16 89.4 168 36.3
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.4e-13 81.3 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 8.9e-13 79.3 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.0e-12 78.2 72 56.9
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.4e-10 71.2 61 63.9
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.2e-10 70.9 61 73.8
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.3e-10 69.3 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 2.1e-06 58.2 40 67.5


User provided reference genes

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