Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1507.7 765 100.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1371.7 838 82.7
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1363.2 838 82.9
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 838 79.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 838 79.2
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 838 79.0
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1264.6 838 75.7
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 838 76.4
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1263.4 837 76.1
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1262.7 838 75.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1260.4 840 75.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1252.3 838 74.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1243.0 838 76.0
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1243.0 838 76.0
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1236.5 834 74.7
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1236.1 838 74.2
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1234.9 865 73.4
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1228.8 838 74.6
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1228.4 855 73.7
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1226.8 838 73.6
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1225.3 838 74.1
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1224.9 838 74.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1217.2 840 73.7
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1216.4 840 73.2
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1216.4 912 69.5
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1215.7 838 74.0
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1215.3 838 73.7
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1214.9 830 74.8
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1214.5 839 72.9
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 838 72.7
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1208.4 838 72.1
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1208.4 839 72.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1206.8 838 72.4
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 838 72.8
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1204.1 839 72.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1203.7 838 72.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1203.3 838 72.9
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1199.9 826 73.5
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1199.1 838 72.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1198.0 838 71.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1196.4 838 71.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 838 72.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1195.3 838 72.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1194.5 839 72.1
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 839 72.0
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 838 72.0
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 838 72.2
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1193.7 845 71.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1192.6 838 72.2
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1192.6 838 71.4
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1192.2 838 72.6
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 838 72.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 838 71.1
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1191.4 839 72.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1190.6 845 71.7
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1190.6 838 71.7
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1190.6 839 72.5
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 845 71.5
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 839 72.0
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1187.2 838 71.7
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1186.4 802 74.4
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1186.0 844 72.5
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1185.6 839 71.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 838 71.8
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 838 72.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 838 71.5
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1179.9 845 71.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1179.5 839 71.2
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1177.9 845 71.0
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1174.8 838 69.8
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1173.3 838 69.9
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1170.2 967 64.5
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1169.5 870 69.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1166.8 911 66.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 840 70.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1164.1 901 67.3
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 838 71.0
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1161.4 843 69.4
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1156.4 908 66.6
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1153.3 811 72.6
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1135.9 750 76.1
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 867 67.6
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1129.8 822 70.4
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1129.8 838 69.5
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1105.5 767 71.7
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1104.4 842 68.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 743 73.8
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1100.9 743 73.2
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1099.7 741 74.2
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1097.8 781 70.7
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1095.5 751 73.6
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 803 69.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 5.2e-312 1074.7 842 67.3
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 3.2e-304 1048.1 814 66.7
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 3.7e-300 1034.6 858 62.1
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 2.4e-299 1031.9 839 62.6
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 2.5e-296 1021.9 791 66.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 1.2e-295 1019.6 844 61.8
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 1.6e-295 1019.2 638 79.0
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 1.6e-295 1019.2 697 72.6
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 1.5e-293 1012.7 748 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 4.9e-292 1007.7 823 62.2
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.0e-286 989.9 654 74.8
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 1.7e-284 982.6 852 59.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 3.5e-282 974.9 847 59.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.9e-276 955.3 839 58.9
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.6e-263 912.9 807 61.3
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.2e-235 818.9 606 70.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 7.4e-216 754.6 542 69.6
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 9.4e-195 684.5 415 80.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.1e-194 683.3 513 67.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.2e-143 513.8 329 77.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.1e-109 399.4 297 70.7
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 9.7e-99 365.5 254 72.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.2e-98 364.4 196 89.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-90 337.0 256 63.7
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-85 322.0 285 61.1
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.5e-78 298.5 385 47.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.7e-67 260.0 182 71.4
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 7.5e-67 259.6 274 54.4
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.9e-66 256.9 263 55.9
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.0e-52 210.7 139 75.5
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 4.7e-45 187.2 119 79.8
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.1e-36 159.5 162 57.4
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.7e-34 152.1 83 84.3
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-32 146.0 140 52.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 3.5e-32 144.4 82 87.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.6e-29 134.4 94 68.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.5e-22 111.7 74 75.7
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.5e-22 111.7 79 67.1
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 9.6e-22 109.8 67 79.1
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 5.3e-20 104.0 74 71.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.2e-16 92.8 56 76.8
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.1e-14 86.3 105 51.4
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 2.4e-12 78.6 38 89.5
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.2e-10 72.0 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.4e-09 68.6 51 66.7
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 7.1e-09 67.0 41 80.5


User provided reference genes

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