Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 2409.8 1246 100.0
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 2023.4 1282 83.2
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 2008.4 1280 81.3
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1968.7 1281 79.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1964.9 1281 79.5
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1964.5 1281 79.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1771.9 1261 74.0
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1763.8 1259 73.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1761.5 1284 72.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1760.7 1263 73.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1756.9 1260 72.5
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1754.2 1285 71.1
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1745.3 1283 70.8
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1744.2 1261 72.5
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1743.8 1274 71.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1737.6 1278 72.1
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1734.5 1274 71.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1734.2 1284 71.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1732.2 1285 70.6
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1725.7 1305 69.7
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1725.7 1278 70.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1706.8 1329 69.0
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1705.3 1286 69.8
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1276 70.1
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1704.1 1265 70.8
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1701.8 1269 70.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1698.3 1288 70.6
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1697.6 1266 70.5
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1265 70.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1265 71.1
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1678.7 1284 68.8
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1672.9 1261 69.9
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1672.9 1267 69.5
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1267 69.4
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1667.9 1279 67.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1663.7 1338 66.8
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1659.8 1304 66.9
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1659.8 1292 68.5
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1657.9 1263 68.7
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1654.0 1279 69.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1283 67.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1652.5 1285 67.8
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1648.3 1278 67.8
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1639.8 1317 66.1
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1639.4 1260 67.9
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1637.9 1270 68.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1255 67.9
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1282 68.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1633.2 1286 68.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1630.5 1280 68.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1259 67.1
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1621.3 1260 66.7
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1621.3 1258 66.5
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1260 66.7
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1260 67.1
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1612.8 1283 66.3
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1610.5 1249 68.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1607.0 1259 67.0
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1607.0 1273 67.2
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1605.5 1285 65.5
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1265 67.4
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1278 66.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1263 66.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1264 66.0
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1593.6 1287 66.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1590.9 1341 64.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1588.9 1278 65.1
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1587.0 1269 65.2
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1584.7 1260 66.2
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1582.8 1280 66.6
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1191 69.6
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1576.6 1168 70.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1575.5 1282 65.6
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1566.2 1262 65.7
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1565.4 1338 63.2
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1563.5 1255 66.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1255 66.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1195 69.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1256 65.8
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1545.4 1256 65.8
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1545.0 1259 65.4
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1519.2 1255 64.1
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1256 64.3
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1510.4 1260 65.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1492.6 1198 65.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1483.8 1219 65.4
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1470.7 1303 61.4
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1448.7 999 74.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1435.2 1020 73.1
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1415.6 1178 63.9
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1409.0 1289 58.9
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1400.6 1267 59.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1398.6 1275 59.5
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1373.2 1261 59.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1333.2 1254 58.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1263.4 1016 65.7
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1205.7 895 68.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1200.7 959 68.2
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1140.9 975 61.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1106.7 897 66.2
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1099.3 1273 47.8
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1095.1 1257 51.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1088.2 1253 49.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.5e-303 1046.6 801 66.2
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.4e-293 1013.4 816 64.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 4.5e-279 965.3 671 75.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 4.1e-272 942.2 1232 44.6
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 8.3e-249 864.8 1238 42.6
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.0e-210 737.3 546 71.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 3.5e-207 726.5 1330 36.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.8e-188 663.7 634 57.7
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 7.6e-186 655.6 609 57.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.7e-178 629.0 1406 33.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.5e-161 572.8 488 64.8
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.6e-159 568.2 1278 32.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.5e-157 561.6 681 47.4
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.7e-153 548.1 492 62.4
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.2e-132 478.0 335 71.3
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.0e-126 459.1 670 45.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 5.4e-115 420.2 1166 30.4
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 8.4e-100 369.8 342 55.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 7.1e-99 366.7 278 69.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.1e-95 353.2 250 75.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.6e-87 328.9 257 70.8
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.3e-83 313.2 277 60.6
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.3e-83 313.2 277 60.6
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.7e-73 280.4 238 60.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 5.5e-59 234.2 166 73.5
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 9.4e-59 233.4 174 67.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 7.4e-56 223.8 179 64.2
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.9e-50 203.8 161 65.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.6e-48 198.7 161 62.7
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.7e-42 178.7 104 78.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.8e-38 166.0 108 76.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.5e-35 155.6 1259 22.6
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.2e-35 154.8 112 73.2
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 6.1e-34 151.0 222 44.1
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 3.4e-32 145.2 111 68.5
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 6.3e-23 114.4 115 51.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.4e-22 113.2 137 41.6
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 4.1e-22 111.7 115 49.6
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.4e-17 96.7 62 77.4
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.5e-16 93.2 158 39.2
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 3.4e-16 92.0 124 44.4
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.9e-15 88.2 151 39.1
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.1e-14 87.0 122 44.3
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 7.0e-14 84.3 46 89.1
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 7.0e-14 84.3 168 35.1
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 3.5e-13 82.0 175 34.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 5.0e-12 78.2 82 52.4
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 9.5e-11 73.9 91 49.5
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.7e-10 71.6 240 29.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-08 66.6 156 35.9
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 5.8e-08 64.7 45 71.1
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.4e-06 60.1 41 70.7
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 3.2e-06 58.9 44 65.9
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 5.4e-06 58.2 33 81.8
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 5.4e-06 58.2 50 56.0
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 5.4e-06 58.2 57 52.6


User provided reference genes

Program Settings