Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.0e-52 208.8 103 100.0
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 2.5e-42 175.3 103 85.4
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 7.3e-42 173.7 103 83.5
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 6.2e-41 170.6 103 82.5
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 5.4e-37 157.5 103 75.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.6e-36 156.0 103 74.8
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 7.8e-36 153.7 103 73.8
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 2.9e-30 135.2 103 66.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 4.1e-29 131.3 87 72.4
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 2.3e-27 125.6 102 58.8
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 5.1e-27 124.4 95 63.2
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.1e-27 124.4 100 59.0
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.1e-26 123.2 103 62.1
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.1e-26 123.2 92 65.2
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.1e-26 123.2 98 61.2
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 2.8e-25 118.6 103 60.2
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.4e-24 116.3 98 57.1
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 4.0e-24 114.8 88 60.2
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 4.0e-24 114.8 103 59.2
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 5.2e-24 114.4 100 57.0
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 5.2e-24 114.4 103 57.3
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-23 112.8 106 57.5
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-23 112.8 106 57.5
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.5e-23 112.8 83 62.7
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 4.4e-23 111.3 100 53.0
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.4e-23 111.3 106 56.6
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.4e-23 111.3 106 56.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 4.4e-23 111.3 80 65.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 5.8e-23 110.9 85 64.7
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 9.9e-23 110.2 99 53.5
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.7e-22 109.4 97 53.6
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.2e-22 109.0 83 55.4
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.2e-22 109.0 106 54.7
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.2e-22 109.0 106 54.7
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.2e-22 109.0 106 54.7
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 3.8e-22 108.2 86 58.1
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 3.8e-22 108.2 102 51.0
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 6.4e-22 107.5 83 62.7
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.4e-21 106.3 99 59.6
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.4e-21 106.3 103 50.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.9e-21 105.9 100 55.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 7.1e-21 104.0 100 55.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 9.2e-21 103.6 81 63.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 9.2e-21 103.6 104 45.2
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 9.2e-21 103.6 112 51.8
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 9.2e-21 103.6 94 51.1
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.2e-20 103.2 81 58.0
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.6e-20 102.8 105 45.7
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 2.1e-20 102.4 101 53.5
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.1e-20 102.4 102 48.0
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 3.5e-20 101.7 85 50.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 3.5e-20 101.7 85 50.6
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 4.6e-20 101.3 81 56.8
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 6.0e-20 100.9 101 51.5
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 6.0e-20 100.9 79 62.0
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 7.8e-20 100.5 85 51.8
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 7.8e-20 100.5 84 58.3
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 7.8e-20 100.5 106 45.3
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.7e-19 99.4 90 50.0
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 3.0e-19 98.6 76 65.8
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.9e-19 98.2 101 51.5
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.7e-19 97.1 74 55.4
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.1e-18 96.7 83 51.8
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.5e-18 95.5 83 51.8
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.5e-18 95.5 102 46.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 2.5e-18 95.5 78 57.7
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 3.3e-18 95.1 76 57.9
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 3.3e-18 95.1 73 64.4
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 4.3e-18 94.7 111 44.1
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.3e-18 94.7 80 56.2
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 4.3e-18 94.7 79 63.3
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 5.6e-18 94.4 79 54.4
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 9.6e-18 93.6 79 62.0
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 9.6e-18 93.6 103 45.6
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.3e-17 93.2 78 53.8
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 3.6e-17 91.7 103 49.5
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 3.6e-17 91.7 78 57.7
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 3.6e-17 91.7 74 58.1
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 3.6e-17 91.7 74 56.8
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 4.8e-17 91.3 79 55.7
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 6.2e-17 90.9 97 53.6
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.1e-16 90.1 79 60.8
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.8e-16 89.4 74 54.1
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 2.4e-16 89.0 76 59.2
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 2.0e-15 85.9 76 51.3
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.6e-15 85.5 68 57.4
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 7.6e-15 84.0 65 56.9
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 7.6e-15 84.0 65 56.9
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 9.9e-15 83.6 50 86.0
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.3e-14 83.2 70 51.4
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.7e-14 82.8 102 44.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.8e-14 81.6 84 48.8
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.8e-14 81.6 75 54.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.9e-14 81.3 67 58.2
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.9e-14 81.3 67 58.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 8.4e-14 80.5 78 55.1
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.4e-13 79.0 79 49.4
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.2e-13 78.2 79 51.9
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.2e-13 78.2 78 52.6
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.1e-12 75.9 77 51.9
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 2.1e-12 75.9 77 57.1
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.7e-12 75.5 79 51.9
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.0e-11 73.6 98 41.8
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.7e-11 72.8 71 49.3
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.3e-11 72.4 56 62.5
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 6.6e-11 70.9 91 41.8
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 1.8e-08 62.8 74 44.6
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 9.0e-08 60.5 72 47.2
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 9.0e-08 60.5 72 47.2
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 9.0e-08 60.5 62 46.8
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.2e-07 60.1 54 53.7
COL.COLO4_24647 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.6e-07 58.9 43 72.1
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 4.5e-07 58.2 47 66.0


User provided reference genes

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