Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 7.1e-65 250.4 119 100.0
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 2.0e-35 152.5 126 61.1
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 3.4e-35 151.8 122 67.2
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-34 149.4 126 62.7
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.0e-27 125.9 128 51.6
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 2.0e-27 125.9 128 51.6
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.8e-26 121.7 122 52.5
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.8e-26 121.7 124 50.8
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 5.0e-26 121.3 123 51.2
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.1e-25 120.2 123 51.2
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.8e-23 112.8 122 52.5
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 9.7e-22 107.1 122 50.8
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.2e-19 100.1 122 41.0
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 3.4e-19 98.6 130 40.0
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.4e-17 93.2 117 38.5
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 1.9e-17 92.8 118 41.5
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 2.5e-17 92.4 124 45.2
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 4.2e-17 91.7 118 41.5
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.2e-17 91.7 117 38.5
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.2e-17 91.7 117 38.5
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 9.4e-17 90.5 123 39.0
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 1.6e-16 89.7 124 44.4
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 2.1e-16 89.4 117 40.2
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 3.6e-16 88.6 118 42.4
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 3.6e-16 88.6 117 38.5
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 3.6e-16 88.6 117 38.5
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.0e-15 87.0 117 38.5
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 6.7e-15 84.3 121 39.7
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.8e-15 84.0 117 37.6
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-14 83.6 117 37.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-14 82.8 107 39.3
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 1.3e-13 80.1 122 38.5
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.2e-13 79.3 127 38.6
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-13 79.0 119 37.8
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.8e-13 78.2 117 35.9
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-12 76.3 117 34.2
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.1e-12 75.1 113 37.2
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.1e-12 73.9 118 33.1
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-11 73.6 118 35.6
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-11 73.2 116 31.0
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-11 73.2 124 36.3
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-11 73.2 123 39.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-11 72.8 119 37.0
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.6e-11 72.4 119 34.5
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-11 72.4 116 37.1
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-11 72.0 119 37.0
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 5.9e-11 71.2 124 36.3
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-11 71.2 115 33.9
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-10 70.5 120 35.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-10 70.5 120 35.8
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-10 70.5 119 34.5
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.3e-10 70.1 124 37.1
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-10 70.1 114 33.3
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-10 69.7 114 33.3
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-10 69.7 124 36.3
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-10 69.3 114 36.0
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-10 69.3 112 36.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-10 69.3 119 37.0
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.8e-10 68.6 123 38.2
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.0e-10 68.2 113 34.5
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.5e-10 67.8 124 39.5
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.5e-10 67.8 111 33.3
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.5e-10 67.4 124 39.5
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.5e-10 67.4 114 38.6
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.5e-10 67.4 114 38.6
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-09 67.0 115 32.2
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-09 67.0 117 32.5
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-09 66.6 119 34.5
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 1.9e-09 66.2 91 40.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-09 66.2 125 34.4
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-09 65.5 114 38.6
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-09 65.5 120 33.3
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.5e-09 64.7 118 34.7
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-09 64.7 115 33.9
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-09 64.7 124 33.1
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.5e-09 64.7 117 30.8
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.2e-09 64.3 118 34.7
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.2e-09 64.3 118 34.7
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 63.9 114 30.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 63.9 115 31.3
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.4e-09 63.9 119 35.3
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-08 63.5 114 38.6
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 1.2e-08 63.5 119 34.5
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.6e-08 63.2 116 36.2
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-08 62.8 110 36.4
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-08 62.4 107 36.4
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-08 62.0 115 36.5
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-08 62.0 115 27.8
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-08 62.0 115 27.8
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.6e-08 62.0 115 27.8
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 3.6e-08 62.0 118 34.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-08 62.0 106 37.7
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 3.6e-08 62.0 115 36.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 6.1e-08 61.2 107 32.7
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 7.9e-08 60.8 106 37.7
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 7.9e-08 60.8 118 33.1
Gohir.D02G213400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-07 60.5 74 39.2
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-07 60.5 115 33.0
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-07 60.1 94 36.2
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.3e-07 59.3 122 32.8
Gohir.D02G213300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-07 59.3 74 37.8
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-07 59.3 116 33.6
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-07 58.9 107 36.4
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.9e-07 58.5 97 35.1
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-07 58.5 118 32.2
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-07 58.5 117 36.8
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-07 58.5 115 34.8
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.9e-07 58.5 114 32.5
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 5.1e-07 58.2 101 34.7
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-07 57.8 105 32.4
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 6.7e-07 57.8 98 36.7
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 120 31.7
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 1.5e-06 56.6 120 29.2
AT4G01500 Arabidopsis thaliana HOM05D000466 ORTHO05D000331 2.0e-06 56.2 118 33.9
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-06 56.2 105 31.4
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.0e-06 56.2 121 33.1
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.0e-06 56.2 120 31.7
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.0e-06 56.2 120 31.7
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.6e-06 55.8 93 35.5
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.6e-06 55.8 105 31.4
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 2.6e-06 55.8 116 29.3
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 2.6e-06 55.8 116 29.3
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-06 55.5 120 34.2
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-06 55.5 117 31.6
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-06 55.5 111 27.9
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-06 55.1 121 33.1
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-06 55.1 121 33.1
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.4e-06 55.1 121 32.2
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-06 55.1 119 31.9
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-06 55.1 106 34.0
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 4.4e-06 55.1 116 31.9
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 4.4e-06 55.1 117 31.6
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 4.4e-06 55.1 117 31.6
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 4.4e-06 55.1 117 31.6
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 5.7e-06 54.7 103 32.0
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.7e-06 54.7 121 32.2
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 5.7e-06 54.7 116 29.3
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.7e-06 54.7 116 29.3
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.7e-06 54.7 120 35.0
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.4e-06 54.3 121 32.2
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 7.4e-06 54.3 121 33.1
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.7e-06 53.9 121 31.4
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.7e-06 53.9 107 34.6
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 9.7e-06 53.9 110 31.8
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 9.7e-06 53.9 117 29.9


User provided reference genes

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