Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_11324 Corchorus olitorius HOM05D002967 ORTHO05D003281 3.5e-86 321.6 167 100.0
COL.COLO4_11322 Corchorus olitorius HOM05D002967 ORTHO05D003281 1.8e-42 176.4 141 76.6
Duzib264G0622 Durio zibethinus HOM05D002967 ORTHO05D003281 9.3e-39 164.1 207 51.2
Thecc.01G047700 Theobroma cacao HOM05D002967 ORTHO05D003281 1.5e-36 156.8 207 51.2
Gohir.A11G189000 Gossypium hirsutum HOM05D002967 ORTHO05D003281 7.2e-31 137.9 207 45.9
Gohir.D11G195500 Gossypium hirsutum HOM05D002967 ORTHO05D003281 1.8e-29 133.3 207 44.9
Gorai.007G209400 Gossypium raimondii HOM05D002967 ORTHO05D003281 1.8e-29 133.3 207 44.9
Ciclev10025387m.g Citrus clementina HOM05D002967 ORTHO05D003281 2.8e-19 99.4 178 42.1
CSS0044282 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 3.1e-18 95.9 205 38.5
ClCG02G013140 Citrullus lanatus HOM05D002967 ORTHO05D003281 5.3e-18 95.1 204 36.8
Manes.13G130500 Manihot esculenta HOM05D002967 ORTHO05D003281 7.0e-18 94.7 199 40.2
CiPaw.01G026800 Carya illinoinensis HOM05D002967 ORTHO05D003281 9.1e-18 94.4 205 39.0
Cfa004219 Carpinus fangiana HOM05D002967 ORTHO05D003281 3.5e-17 92.4 204 39.7
Potri.007G036200 Populus trichocarpa HOM05D002967 ORTHO05D003281 4.5e-17 92.0 180 39.4
Sed0026248 Sechium edule HOM05D002967 ORTHO05D003281 4.5e-17 92.0 174 41.4
CsaV3_2G017230 Cucumis sativus L. HOM05D002967 ORTHO05D003281 5.9e-17 91.7 204 35.8
Haze_15190 Corylus avellana HOM05D002967 ORTHO05D003281 5.0e-16 88.6 228 36.4
AT2G23530 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 1.5e-15 87.0 174 36.8
Lj4A137T59 Lonicera japonica HOM05D002967 ORTHO05D003281 1.5e-15 87.0 198 37.9
MSTRG.2914 Avicennia marina HOM05D002967 ORTHO05D003281 1.9e-15 86.7 172 40.7
MELO3C020926.2 Cucumis melo HOM05D002967 ORTHO05D003281 3.2e-15 85.9 204 34.8
Dinv26755 Davidia involucrata HOM05D002967 ORTHO05D003281 4.2e-15 85.5 204 37.7
Oeu032933.1 Olea europaea HOM05D002967 ORTHO05D003281 4.2e-15 85.5 171 41.5
Phvul.002G022700 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 7.2e-15 84.7 204 34.8
AL4G13520 Arabidopsis lyrata HOM05D002967 ORTHO05D003281 9.4e-15 84.3 175 36.0
Hma1.2p1_0261F.1_g105110 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 9.4e-15 84.3 205 37.1
PGR102G1475 Punica granatum HOM05D002967 ORTHO05D003281 1.6e-14 83.6 205 35.6
Nitab4.5_0000108g0270 Nicotiana tabacum HOM05D002967 ORTHO05D003281 2.7e-14 82.8 168 38.7
TWI73G0117 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 2.7e-14 82.8 169 39.6
CANSAT01G1694 Cannabis sativa HOM05D002967 ORTHO05D003281 3.6e-14 82.4 200 36.0
CAN.G836.30 Capsicum annuum HOM05D002967 ORTHO05D003281 6.1e-14 81.6 164 39.6
Sc03g0001250 Simmondsia chinensis HOM05D002967 ORTHO05D003281 6.1e-14 81.6 184 38.0
THA.LOC104819826 Tarenaya hassleriana HOM05D002967 ORTHO05D003281 6.1e-14 81.6 176 38.6
MD02G1160900 Malus domestica HOM05D002967 ORTHO05D003281 1.0e-13 80.9 208 35.6
QL06p043820 Quercus lobata HOM05D002967 ORTHO05D003281 1.0e-13 80.9 177 37.3
CARHR293140 Cardamine hirsuta HOM05D002967 ORTHO05D003281 1.4e-13 80.5 174 35.6
Nitab4.5_0001014g0110 Nicotiana tabacum HOM05D002967 ORTHO05D003281 1.4e-13 80.5 168 37.5
Sabra07G0031600 Salix brachista HOM05D002967 ORTHO05D003281 1.8e-13 80.1 127 46.5
vmacro17899 Vaccinium macrocarpon HOM05D002967 ORTHO05D003281 3.0e-13 79.3 202 35.6
Sp4g02500 Schrenkiella parvula HOM05D002967 ORTHO05D003281 4.0e-13 79.0 173 37.0
FAN26G2244 Fragaria x ananassa HOM05D002967 ORTHO05D003281 5.2e-13 78.6 182 36.3
FAN28G1129 Fragaria x ananassa HOM05D002967 ORTHO05D003281 6.7e-13 78.2 181 36.5
Lsat_1_v5_gn_3_92201 Lactuca sativa HOM05D002967 ORTHO05D003281 6.7e-13 78.2 186 38.7
GSVIVG01005082001 Vitis vinifera HOM05D002967 ORTHO05D003281 6.7e-13 78.2 203 38.9
Solyc02g090200.3 Solanum lycopersicum HOM05D002967 ORTHO05D003281 8.8e-13 77.8 175 38.3
Sopen02g034890 Solanum pennellii HOM05D002967 ORTHO05D003281 8.8e-13 77.8 175 38.3
BolC4t26849H Brassica oleracea HOM05D002967 ORTHO05D003281 1.2e-12 77.4 172 34.9
MD15G1275000 Malus domestica HOM05D002967 ORTHO05D003281 1.2e-12 77.4 208 36.1
Medtr5g018470 Medicago truncatula HOM05D002967 ORTHO05D003281 1.2e-12 77.4 176 37.5
C04p52840 Brassica napus HOM05D002967 ORTHO05D003281 1.5e-12 77.0 195 33.8
Psat2g164120 Pisum sativum HOM05D002967 ORTHO05D003281 1.5e-12 77.0 179 41.9
A04p17930 Brassica napus HOM05D002967 ORTHO05D003281 2.0e-12 76.6 172 35.5
DCAR_025685 Daucus carota HOM05D002967 ORTHO05D003281 2.0e-12 76.6 203 35.0
FAN19G0299 Fragaria x ananassa HOM05D002967 ORTHO05D003281 2.0e-12 76.6 178 36.0
FAN23G1223 Fragaria x ananassa HOM05D002967 ORTHO05D003281 2.0e-12 76.6 178 36.0
Atru.chr3.451 Acer truncatum HOM05D002967 ORTHO05D003281 3.3e-12 75.9 204 36.3
Cc07_g05530 Coffea canephora HOM05D002967 ORTHO05D003281 3.3e-12 75.9 173 39.3
Prupe.7G142700 Prunus persica HOM05D002967 ORTHO05D003281 3.3e-12 75.9 170 40.0
TAR376G0613 Trochodendron aralioides HOM05D002967 ORTHO05D003281 4.4e-12 75.5 172 37.2
arahy.Tifrunner.gnm1.ann1.BKM0WC Arachis hypogaea HOM05D002967 ORTHO05D003281 5.7e-12 75.1 196 36.2
Migut.H00488 Erythranthe guttata HOM05D002967 ORTHO05D003281 5.7e-12 75.1 163 39.9
Aa31LG7G13340 Aethionema arabicum HOM05D002967 ORTHO05D003281 7.5e-12 74.7 179 35.8
BraA04t17413Z Brassica rapa HOM05D002967 ORTHO05D003281 7.5e-12 74.7 190 34.2
RcHm_v2.0_Chr2g0103711 Rosa chinensis HOM05D002967 ORTHO05D003281 7.5e-12 74.7 179 36.9
FvH4_1g14770 Fragaria vesca HOM05D002967 ORTHO05D003281 9.7e-12 74.3 177 35.0
Glyma.01G181700 Glycine max HOM05D002967 ORTHO05D003281 9.7e-12 74.3 168 41.1
Peaxi162Scf00993g00025 Petunia axillaris HOM05D002967 ORTHO05D003281 9.7e-12 74.3 183 36.6
VMungo1215G3450 Vigna mungo HOM05D002967 ORTHO05D003281 1.3e-11 73.9 209 34.4
CSS0004019 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 2.2e-11 73.2 188 32.4
PGSC0003DMG400010028 Solanum tuberosum HOM05D002967 ORTHO05D003281 2.2e-11 73.2 167 37.1
Potri.009G108400 Populus trichocarpa HOM05D002967 ORTHO05D003281 2.8e-11 72.8 213 33.8
Aqoxy5G01410 Aquilegia oxysepala HOM05D002967 ORTHO05D003281 4.8e-11 72.0 206 34.5
Glyma.11G059900 Glycine max HOM05D002967 ORTHO05D003281 4.8e-11 72.0 203 36.0
Rhsim08G0106600 Rhododendron simsii HOM05D002967 ORTHO05D003281 4.8e-11 72.0 177 37.3
RhsimUnG0104900 Rhododendron simsii HOM05D002967 ORTHO05D003281 4.8e-11 72.0 177 37.3
Nn5g29395 Nelumbo nucifera HOM05D002967 ORTHO05D003281 8.2e-11 71.2 181 36.5
Carub.0004s0275 Capsella rubella HOM05D002967 ORTHO05D003281 1.1e-10 70.9 166 34.3
Aa31LG6G13870 Aethionema arabicum HOM05D002967 ORTHO05D003281 1.4e-10 70.5 174 35.6
Cpa.g.sc15.99 Carica papaya HOM05D002967 ORTHO05D003281 1.4e-10 70.5 134 44.0
Lalb_Chr05g0213121 Lupinus albus HOM05D002967 ORTHO05D003281 1.4e-10 70.5 170 35.9
TAR628G0275 Trochodendron aralioides HOM05D002967 ORTHO05D003281 2.4e-10 69.7 181 35.4
PSO675G7490 Papaver somniferum HOM05D002967 ORTHO05D003281 5.3e-10 68.6 184 32.1
Dinv42113 Davidia involucrata HOM05D002967 ORTHO05D003281 7.0e-10 68.2 182 31.3
Sabra09G0082700 Salix brachista HOM05D002967 ORTHO05D003281 7.0e-10 68.2 166 32.5
AT4G37110 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 1.2e-09 67.4 170 35.9
BolC1t00202H Brassica oleracea HOM05D002967 ORTHO05D003281 1.2e-09 67.4 179 36.3
QL11p039087 Quercus lobata HOM05D002967 ORTHO05D003281 1.6e-09 67.0 180 32.8
Haze_01916 Corylus avellana HOM05D002967 ORTHO05D003281 2.0e-09 66.6 172 33.7
TPR.G11336 Trifolium pratense HOM05D002967 ORTHO05D003281 2.0e-09 66.6 166 35.5
Ah.02g123930 Amaranthus hybridus HOM05D002967 ORTHO05D003281 2.7e-09 66.2 194 34.0
Lj2g0010753 Lotus japonicus HOM05D002967 ORTHO05D003281 2.7e-09 66.2 198 32.8
FAN15G1887 Fragaria x ananassa HOM05D002967 ORTHO05D003281 3.5e-09 65.9 174 34.5
MBI16_g19888_MAGBIO Magnolia biondii HOM05D002967 ORTHO05D003281 3.5e-09 65.9 166 36.1
TWI79G0973 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 3.5e-09 65.9 195 31.8
DCAR_025684 Daucus carota HOM05D002967 ORTHO05D003281 4.5e-09 65.5 170 37.1
FAN20G0861 Fragaria x ananassa HOM05D002967 ORTHO05D003281 4.5e-09 65.5 171 32.7
HanXRQChr12g0361041 Helianthus annuus HOM05D002967 ORTHO05D003281 4.5e-09 65.5 189 34.9
Hund13588 Selenicereus undatus HOM05D002967 ORTHO05D003281 4.5e-09 65.5 180 34.4
HPP92_019447 Vanilla planifolia HOM05D002967 ORTHO05D003281 4.5e-09 65.5 169 34.9
A01p01940 Brassica napus HOM05D002967 ORTHO05D003281 7.7e-09 64.7 168 36.9
BraA01t00183Z Brassica rapa HOM05D002967 ORTHO05D003281 7.7e-09 64.7 201 34.3
FvH4_2g07200 Fragaria vesca HOM05D002967 ORTHO05D003281 7.7e-09 64.7 171 32.2
C01p02100 Brassica napus HOM05D002967 ORTHO05D003281 1.0e-08 64.3 175 36.6
CDE04G1790 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 1.0e-08 64.3 186 32.3
Hma1.2p1_1353F.1_g277770 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.0e-08 64.3 162 34.6
Hma1.2p1_1527F.1_g289034 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.0e-08 64.3 162 34.6
Lalb_Chr09g0322901 Lupinus albus HOM05D002967 ORTHO05D003281 1.0e-08 64.3 173 34.1
Ah.03g144020 Amaranthus hybridus HOM05D002967 ORTHO05D003281 1.3e-08 63.9 165 35.2
PSO541G5630 Papaver somniferum HOM05D002967 ORTHO05D003281 1.3e-08 63.9 184 33.2
SalBow1G6871 Salvia bowleyana HOM05D002967 ORTHO05D003281 1.3e-08 63.9 170 34.7
ClCG09G017650 Citrullus lanatus HOM05D002967 ORTHO05D003281 2.9e-08 62.8 166 33.7
CARHR245410 Cardamine hirsuta HOM05D002967 ORTHO05D003281 5.0e-08 62.0 184 34.2
AUR62001978 Chenopodium quinoa HOM05D002967 ORTHO05D003281 5.0e-08 62.0 164 34.8
Glyma.02G136900 Glycine max HOM05D002967 ORTHO05D003281 5.0e-08 62.0 161 33.5
Manes.15G144900 Manihot esculenta HOM05D002967 ORTHO05D003281 5.0e-08 62.0 166 31.9
Medtr5g018400 Medicago truncatula HOM05D002967 ORTHO05D003281 5.0e-08 62.0 164 32.3
Nitab4.5_0000520g0070 Nicotiana tabacum HOM05D002967 ORTHO05D003281 1.5e-07 60.5 168 32.7
Phvul.003G296100 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 1.9e-07 60.1 161 32.3
Lsat_1_v5_gn_9_109060 Lactuca sativa HOM05D002967 ORTHO05D003281 2.5e-07 59.7 177 33.3
Actinidia27930 Actinidia chinensis HOM05D002967 ORTHO05D003281 3.2e-07 59.3 165 32.7
Carub.0007s0330 Capsella rubella HOM05D002967 ORTHO05D003281 3.2e-07 59.3 191 31.4
FAN24G3221 Fragaria x ananassa HOM05D002967 ORTHO05D003281 3.2e-07 59.3 171 31.6
RcHm_v2.0_Chr6g0259631 Rosa chinensis HOM05D002967 ORTHO05D003281 3.2e-07 59.3 169 29.6
MELO3C021926.2 Cucumis melo HOM05D002967 ORTHO05D003281 4.2e-07 58.9 167 34.1
Prupe.8G113300 Prunus persica HOM05D002967 ORTHO05D003281 4.2e-07 58.9 176 32.4
SGA_v2.0_scaffold204G41615 Striga asiatica HOM05D002967 ORTHO05D003281 5.5e-07 58.5 218 30.7
Zm00001eb200060 Zea mays HOM05D002967 ORTHO05D003281 5.5e-07 58.5 172 30.8
BcaNung03506 Brassica carinata HOM05D002967 ORTHO05D003281 7.2e-07 58.2 185 33.0
CDE07G0802 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 7.2e-07 58.2 200 30.0
SGA_v2.0_scaffold51G18840 Striga asiatica HOM05D002967 ORTHO05D003281 7.2e-07 58.2 189 29.1
vmacro19473 Vaccinium macrocarpon HOM05D002967 ORTHO05D003281 7.2e-07 58.2 161 29.2
Prupe.8G113400 Prunus persica HOM05D002967 ORTHO05D003281 1.2e-06 57.4 156 32.7
SalBow8G2386 Salvia bowleyana HOM05D002967 ORTHO05D003281 1.2e-06 57.4 161 31.7
SalBow8G5019 Salvia bowleyana HOM05D002967 ORTHO05D003281 1.2e-06 57.4 161 31.7
Cc00_g04700 Coffea canephora HOM05D002967 ORTHO05D003281 2.1e-06 56.6 189 30.2
Os11g0568300 Oryza sativa ssp. japonica HOM05D002967 ORTHO05D003281 2.1e-06 56.6 176 30.1
Sed0006017 Sechium edule HOM05D002967 ORTHO05D003281 2.1e-06 56.6 170 32.9
Zm00001eb114140 Zea mays HOM05D002967 ORTHO05D003281 2.1e-06 56.6 172 30.2
AUR62003826 Chenopodium quinoa HOM05D002967 ORTHO05D003281 2.7e-06 56.2 183 31.7
VMungo0251G2728 Vigna mungo HOM05D002967 ORTHO05D003281 2.7e-06 56.2 162 32.7
GSVIVG01031846001 Vitis vinifera HOM05D002967 ORTHO05D003281 2.7e-06 56.2 169 33.1
ECA240G3361 Erigeron canadensis HOM05D002967 ORTHO05D003281 4.7e-06 55.5 159 34.0
Migut.H02541 Erythranthe guttata HOM05D002967 ORTHO05D003281 4.7e-06 55.5 165 32.7
Sp7g34660 Schrenkiella parvula HOM05D002967 ORTHO05D003281 4.7e-06 55.5 179 33.0
SEGI_24787 Sequoiadendron giganteum HOM05D002967 ORTHO05D003281 6.1e-06 55.1 152 33.6
Duzib052G0060 Durio zibethinus HOM05D002967 ORTHO05D003281 8.0e-06 54.7 175 33.1


User provided reference genes

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