Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.8e-197 690.3 347 100.0
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 3.1e-161 572.0 349 84.2
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.1e-158 563.5 349 83.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.8e-154 548.1 348 80.5
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 4.8e-154 548.1 348 79.9
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.2e-152 543.5 348 79.6
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 9.4e-126 454.1 286 76.6
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.5e-123 446.8 356 67.7
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 5.7e-123 444.9 364 65.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 5.7e-123 444.9 356 67.1
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.4e-123 444.5 343 67.3
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.4e-121 440.3 306 70.9
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.8e-121 439.9 362 65.5
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.8e-121 439.9 340 68.2
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-120 436.8 363 64.7
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.6e-120 436.8 349 67.3
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.6e-120 436.8 344 66.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 2.0e-120 436.4 334 67.1
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.0e-119 434.1 343 65.9
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.7e-119 433.3 334 66.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-119 433.0 343 65.9
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.9e-119 432.6 317 69.1
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.8e-119 432.2 354 63.6
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 3.8e-119 432.2 343 65.6
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 5.0e-119 431.8 316 69.3
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 5.0e-119 431.8 316 69.3
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 5.0e-119 431.8 316 69.3
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.5e-119 431.4 341 67.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 8.5e-119 431.0 363 63.9
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-118 430.3 346 65.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.9e-118 429.9 367 62.7
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.9e-118 429.9 347 66.3
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.5e-118 429.5 357 64.1
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.2e-118 429.1 334 66.2
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.2e-118 429.1 360 63.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 5.5e-118 428.3 292 71.6
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.2e-117 427.2 363 63.1
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.6e-117 426.8 344 66.3
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 1.0e-116 424.1 360 65.0
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.4e-116 423.7 357 62.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.8e-116 423.3 278 74.1
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.0e-116 422.5 342 63.5
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.0e-116 422.5 350 64.3
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 4.0e-116 422.2 336 65.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-115 420.6 278 73.4
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.5e-115 420.2 367 60.5
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.0e-115 419.9 341 63.6
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.4e-115 418.7 301 68.8
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 4.4e-115 418.7 316 68.0
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 7.5e-115 417.9 303 68.3
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 7.5e-115 417.9 339 64.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.8e-114 416.0 361 63.2
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 8.3e-114 414.5 339 63.7
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.4e-113 413.7 357 62.2
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.4e-113 413.7 348 62.6
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.1e-113 412.5 368 63.0
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.3e-113 411.8 325 65.2
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 9.1e-113 411.0 360 60.3
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.6e-112 410.2 297 69.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 8.5e-111 404.4 263 73.4
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 8.5e-111 404.4 335 63.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 8.5e-111 404.4 366 60.7
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.6e-109 400.2 342 60.5
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.0e-108 397.5 297 69.4
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 8.8e-108 394.4 308 63.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.2e-107 394.0 304 66.4
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.7e-107 391.7 334 61.7
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 7.5e-107 391.3 315 61.9
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 1.3e-106 390.6 285 67.4
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.2e-106 389.8 348 60.1
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.8e-105 386.7 362 58.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.3e-103 380.6 368 58.4
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.3e-103 379.8 349 57.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 5.0e-103 378.6 313 61.7
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.8e-101 372.9 346 60.1
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.3e-100 369.8 335 58.2
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.7e-98 363.6 336 60.4
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.1e-97 360.9 373 54.7
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.7e-96 356.3 300 61.0
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 8.6e-95 351.3 257 64.2
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.1e-93 346.7 264 64.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 6.1e-93 345.1 299 56.9
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 8.0e-93 344.7 309 56.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 2.3e-92 343.2 263 63.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.0e-92 342.4 260 62.7
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.8e-92 341.7 247 68.0
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.5e-91 340.5 261 62.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 9.8e-91 337.8 307 56.7
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.2e-90 336.7 248 66.5
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.1e-89 334.3 249 67.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.2e-89 332.8 264 63.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 9.2e-89 331.3 366 55.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.0e-87 326.2 261 60.9
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 8.6e-87 324.7 280 57.5
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.6e-87 324.7 265 60.4
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.6e-87 324.7 241 65.1
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-86 324.3 265 60.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.5e-86 323.9 265 59.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 4.7e-85 318.9 253 57.7
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-84 317.4 299 52.8
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.4e-84 317.4 268 56.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.8e-84 317.0 242 64.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.3e-84 316.6 253 57.3
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-83 314.3 277 55.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.5e-83 313.9 266 56.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.5e-83 313.9 260 57.3
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.4e-83 312.8 254 56.7
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.4e-83 312.8 268 55.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.4e-83 312.8 268 55.6
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-82 310.1 253 56.5
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.7e-82 309.3 256 56.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 6.4e-82 308.5 271 55.0
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-81 307.0 253 56.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-81 307.0 253 56.5
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.1e-81 305.8 232 64.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 4.3e-78 295.8 255 54.9
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.6e-77 293.9 253 55.7
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-75 287.3 253 53.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-75 287.3 253 53.0
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 5.8e-75 285.4 263 51.3
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 9.9e-75 284.6 253 52.6
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.9e-74 282.3 230 55.7
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 8.3e-74 281.6 251 55.4
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.1e-73 281.2 230 63.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.4e-73 280.0 231 56.7
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.0e-71 274.6 264 53.4
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 2.3e-71 273.5 269 52.8
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 6.2e-69 265.4 197 65.5
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.8e-68 261.9 255 50.2
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 4.4e-67 259.2 175 70.9
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.8e-66 256.1 237 54.4
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-65 253.1 265 52.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-64 250.4 267 50.6
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-64 250.0 266 49.6
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 2.3e-63 246.9 189 65.6
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.6e-63 245.4 229 51.5
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.3e-61 241.1 279 49.1
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 3.4e-59 233.0 166 65.7
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-55 219.9 407 35.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.0e-55 219.9 240 50.0
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.9e-55 219.5 181 57.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 5.6e-54 215.7 268 47.8
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-51 207.6 195 54.4
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.9e-50 202.6 135 71.1
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.0e-48 195.7 137 70.8
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.7e-47 192.2 156 57.7
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 6.7e-47 192.2 166 53.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-42 177.9 240 45.4
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.5e-38 163.7 237 38.4
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.2e-37 158.7 199 46.2
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.1e-36 158.3 127 60.6
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 9.3e-33 145.2 86 80.2
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.3e-30 136.7 215 38.6
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.8e-28 131.0 204 43.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 6.9e-28 129.0 243 33.3
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.1e-24 117.5 157 49.7
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-24 116.3 122 50.8
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 4.6e-24 116.3 181 36.5
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.1e-20 103.6 109 47.7
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.5e-19 99.8 252 27.4
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 3.2e-17 93.6 92 55.4
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 7.4e-14 82.4 65 63.1
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.2e-13 80.9 60 61.7
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.8e-13 80.5 69 59.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 3.1e-12 77.0 58 65.5
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 4.1e-12 76.6 66 54.5
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.5e-11 74.7 86 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 2.6e-11 73.9 291 28.2
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-11 73.6 68 57.4
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.9e-09 67.8 80 48.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-08 64.7 62 48.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.6e-08 64.7 64 48.4
Gohir.A12G239350 Gossypium hirsutum HOM05D038773 ORTHO05D047438 3.0e-07 60.5 75 48.0
Gorai.008G257600 Gossypium raimondii HOM05D038773 ORTHO05D047438 3.3e-06 57.0 54 48.1


User provided reference genes

Program Settings