Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.4e-176 623.2 415 100.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.8e-155 551.2 400 81.2
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.1e-144 517.3 452 66.4
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 2.0e-138 496.5 454 63.9
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.1e-123 446.0 432 62.7
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.6e-110 401.4 452 55.3
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 2.5e-101 373.2 446 50.4
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.1e-99 367.9 445 49.9
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 9.0e-99 364.8 445 49.7
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.9e-96 357.1 452 50.9
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 7.1e-96 355.1 446 48.2
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.0e-95 352.1 445 49.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 2.5e-93 346.7 446 46.9
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.1e-91 341.3 445 46.7
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.1e-91 341.3 452 49.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.8e-91 340.5 446 49.1
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 5.3e-91 339.0 447 45.4
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 5.3e-91 339.0 446 45.7
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.2e-90 337.8 447 45.4
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.4e-90 336.3 424 51.4
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.6e-90 335.1 447 46.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-89 334.3 433 46.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 9.3e-88 328.2 299 60.2
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 9.3e-88 328.2 446 46.0
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.2e-87 327.8 446 46.0
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 7.9e-87 325.1 299 61.2
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.0e-86 324.7 483 42.7
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.3e-86 324.3 450 44.2
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 5.1e-86 322.4 448 45.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 6.7e-86 322.0 423 47.5
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 8.7e-86 321.6 443 45.6
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-85 320.9 434 47.0
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 1.9e-85 320.5 299 58.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 7.4e-85 318.5 446 43.5
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 8.1e-84 315.1 551 39.6
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.4e-83 314.3 446 43.7
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-83 314.3 446 45.3
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 3.1e-83 313.2 447 44.1
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.2e-82 311.2 455 43.5
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 2.6e-82 310.1 446 43.9
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 6.5e-81 305.4 447 44.1
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 4.2e-80 302.8 454 43.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 7.1e-80 302.0 454 43.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 7.1e-80 302.0 454 43.2
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.0e-78 298.1 445 43.8
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.1e-78 295.8 424 46.9
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 2.5e-77 293.5 600 37.2
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 4.3e-77 292.7 448 45.3
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 9.6e-77 291.6 504 39.3
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.8e-75 287.3 400 45.8
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 9.0e-75 285.0 445 40.2
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.5e-74 284.3 447 46.8
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.5e-74 284.3 445 44.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 5.9e-74 282.3 448 41.5
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 5.9e-74 282.3 444 40.5
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.5e-73 278.9 446 40.6
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 3.2e-72 276.6 299 52.5
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.3e-72 275.0 445 40.4
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.6e-71 274.2 441 41.3
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 2.1e-71 273.9 445 42.0
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.1e-71 272.3 412 44.4
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.8e-70 270.8 445 40.7
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 3.0e-70 270.0 445 40.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 3.3e-69 266.5 445 38.7
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.3e-68 264.6 446 41.3
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.6e-68 264.2 206 72.3
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 2.8e-68 263.5 445 39.6
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 3.7e-68 263.1 475 37.9
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 3.7e-68 263.1 446 39.7
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 4.8e-68 262.7 446 40.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.1e-67 260.0 433 40.0
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 9.1e-67 258.5 433 39.7
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.5e-66 257.7 444 38.7
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 7.7e-66 255.4 444 38.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.2e-65 253.8 472 36.4
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.9e-65 253.4 457 37.9
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 2.9e-65 253.4 444 38.1
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 3.8e-65 253.1 445 37.1
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 5.0e-65 252.7 482 38.0
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 9.4e-64 248.4 451 38.6
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.6e-63 247.7 447 39.8
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 2.1e-63 247.3 445 37.3
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.0e-62 245.0 454 37.7
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 2.3e-62 243.8 445 40.0
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.7e-61 239.2 244 56.6
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.3e-60 235.7 472 35.6
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.1e-59 235.0 321 44.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.2e-58 231.5 446 35.7
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.5e-58 229.6 467 35.3
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.2e-57 227.3 248 52.0
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.9e-57 226.9 446 37.7
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 8.5e-57 225.3 251 50.2
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 8.5e-57 225.3 302 44.7
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.4e-56 224.6 450 35.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 3.2e-56 223.4 439 36.0
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.1e-55 220.7 447 35.3
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 3.6e-55 219.9 287 45.6
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.1e-55 219.2 446 35.9
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 6.1e-55 219.2 299 44.5
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 7.9e-55 218.8 446 35.7
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.4e-54 218.0 445 34.6
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.8e-54 217.6 446 35.7
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 1.5e-53 214.5 437 35.7
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.7e-52 211.1 315 43.5
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 8.2e-52 208.8 310 44.5
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.4e-51 207.2 412 36.9
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.0e-50 204.1 448 34.6
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 4.5e-50 203.0 448 34.2
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 6.5e-49 199.1 437 34.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.8e-46 191.0 257 42.0
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.5e-45 188.0 447 33.6
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.6e-45 187.2 404 33.4
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.2e-44 184.1 221 49.8
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.7e-39 167.2 230 46.1
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 4.7e-39 166.4 443 28.7
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.4e-38 164.9 330 38.2
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 3.4e-37 160.2 263 38.4
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 8.3e-36 155.6 230 45.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 4.1e-35 153.3 400 32.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 4.1e-35 153.3 302 35.4
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 3.2e-32 143.7 448 28.8
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 3.2e-32 143.7 455 27.5
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.2e-31 141.7 206 41.3
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.8e-30 137.9 160 54.4
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.8e-30 136.0 393 30.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.3e-25 121.7 619 24.1
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.6e-25 119.4 394 28.9
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.6e-23 114.8 204 36.8
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 4.4e-21 106.7 298 27.9
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 2.9e-20 104.0 108 50.0
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 1.8e-19 101.3 82 65.9
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 3.9e-17 93.6 74 66.2
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.9e-16 91.3 185 36.8
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 5.6e-16 89.7 147 39.5
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-15 88.2 160 35.0
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 2.3e-14 84.3 80 55.0
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 3.1e-14 84.0 77 59.7
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 8.9e-14 82.4 66 66.7
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.2e-12 77.8 49 85.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 2.9e-12 77.4 252 26.6
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.9e-12 77.4 318 28.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 8.3e-12 75.9 160 34.4
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.0e-10 69.7 85 45.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.1e-08 65.5 300 22.0
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 5.6e-08 63.2 78 44.9
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 9.5e-08 62.4 44 70.5
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.7e-07 60.1 61 52.5
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.4e-06 58.5 54 59.3


User provided reference genes

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