Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10512 Corchorus olitorius HOM05D000520 ORTHO05D000399 2.3e-117 425.6 223 100.0
Gohir.D11G277400 Gossypium hirsutum HOM05D000520 ORTHO05D000399 2.1e-49 199.9 395 42.3
Gorai.007G299600 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.0e-48 197.6 395 42.3
Gohir.A11G267400 Gossypium hirsutum HOM05D000520 ORTHO05D000399 3.9e-48 195.7 395 42.3
Duzib177G0908 Durio zibethinus HOM05D000520 ORTHO05D000399 1.5e-47 193.7 383 43.1
Duzib128G0684 Durio zibethinus HOM05D000520 ORTHO05D000399 6.2e-46 188.3 369 42.5
Gohir.D08G225800 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.3e-40 170.6 341 39.9
Gorai.004G239800 Gossypium raimondii HOM05D000520 ORTHO05D000399 9.6e-39 164.5 353 38.5
Thecc.05G312300 Theobroma cacao HOM05D000520 ORTHO05D000399 2.8e-38 162.9 244 43.9
Gohir.A08G208900 Gossypium hirsutum HOM05D000520 ORTHO05D000399 6.9e-37 158.3 341 38.1
TWI12G0219 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 9.6e-31 137.9 357 33.9
AUR62005195 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.4e-29 134.0 199 46.7
CiPaw.07G020900 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.7e-27 127.1 390 32.6
Cpa.g.sc48.88 Carica papaya HOM05D000520 ORTHO05D000399 3.6e-22 109.4 379 34.0
Sabra13G0020700 Salix brachista HOM05D000520 ORTHO05D000399 4.8e-22 109.0 251 39.8
Sabra13G0016700 Salix brachista HOM05D000520 ORTHO05D000399 6.2e-22 108.6 368 31.2
AUR62000774 Chenopodium quinoa HOM05D000520 ORTHO05D000399 4.0e-21 105.9 219 38.8
Nitab4.5_0006988g0010 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.4e-20 102.8 98 59.2
QL03p021323 Quercus lobata HOM05D000520 ORTHO05D000399 4.5e-20 102.4 353 31.4
QL03p021357 Quercus lobata HOM05D000520 ORTHO05D000399 4.5e-20 102.4 353 31.4
Potri.005G026100 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.7e-19 100.5 307 32.9
TAR636G3055 Trochodendron aralioides HOM05D000520 ORTHO05D000399 3.8e-19 99.4 307 32.2
vmacro19619 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 6.4e-19 98.6 336 31.8
Ah.04g161080 Amaranthus hybridus HOM05D000520 ORTHO05D000399 5.5e-18 95.5 93 62.4
CSS0034702 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 7.9e-17 91.7 99 53.5
Ciclev10001480m.g Citrus clementina HOM05D000520 ORTHO05D000399 1.0e-16 91.3 390 31.0
PGR031G0260 Punica granatum HOM05D000520 ORTHO05D000399 1.0e-16 91.3 102 52.9
MELO3C004225.2 Cucumis melo HOM05D000520 ORTHO05D000399 3.0e-16 89.7 344 29.9
CsaV3_2G006610 Cucumis sativus L. HOM05D000520 ORTHO05D000399 3.0e-16 89.7 336 29.8
Sed0005450 Sechium edule HOM05D000520 ORTHO05D000399 3.0e-16 89.7 326 31.3
Actinidia21490 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.9e-16 89.4 126 47.6
EL10Ac4g09925 Beta vulgaris HOM05D000520 ORTHO05D000399 3.9e-16 89.4 91 60.4
Manes.09G169700 Manihot esculenta HOM05D000520 ORTHO05D000399 5.1e-16 89.0 350 30.6
Sabra05G0031500 Salix brachista HOM05D000520 ORTHO05D000399 6.7e-16 88.6 359 29.0
Atru.chr2.24 Acer truncatum HOM05D000520 ORTHO05D000399 1.1e-15 87.8 91 58.2
BraA09t37537Z Brassica rapa HOM05D000520 ORTHO05D000399 1.1e-15 87.8 374 29.7
Potri.013G017700 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.1e-15 87.8 118 50.0
CANSAT54G1029 Cannabis sativa HOM05D000520 ORTHO05D000399 2.5e-15 86.7 104 55.8
Sc09g0002980 Simmondsia chinensis HOM05D000520 ORTHO05D000399 3.3e-15 86.3 96 53.1
Hma1.2p1_1292F.1_g273650 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 4.3e-15 85.9 344 29.4
Hma1.2p1_1374F.1_g278785 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 4.3e-15 85.9 344 29.4
ClCG02G015460 Citrullus lanatus HOM05D000520 ORTHO05D000399 5.6e-15 85.5 367 27.5
CSS0032030 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 9.6e-15 84.7 108 52.8
A09p19190 Brassica napus HOM05D000520 ORTHO05D000399 1.3e-14 84.3 374 29.4
CiPaw.08G162500 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.6e-14 84.0 355 29.0
Actinidia19782 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.7e-14 82.8 110 49.1
CARHR289750 Cardamine hirsuta HOM05D000520 ORTHO05D000399 3.7e-14 82.8 96 54.2
PGSC0003DMG400024753 Solanum tuberosum HOM05D000520 ORTHO05D000399 3.7e-14 82.8 103 51.5
THA.LOC104820796 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.8e-14 82.4 374 28.9
Manes.08G118400 Manihot esculenta HOM05D000520 ORTHO05D000399 8.1e-14 81.6 369 29.5
BcaB07g31116 Brassica carinata HOM05D000520 ORTHO05D000399 2.4e-13 80.1 368 29.1
PGR083G0269 Punica granatum HOM05D000520 ORTHO05D000399 4.0e-13 79.3 164 40.9
Glyma.10G152100 Glycine max HOM05D000520 ORTHO05D000399 5.3e-13 79.0 109 49.5
Sp2g06720 Schrenkiella parvula HOM05D000520 ORTHO05D000399 6.9e-13 78.6 368 29.1
Hma1.2p1_2670F.1_g326640 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 9.0e-13 78.2 280 29.6
Phvul.007G196900 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.2e-12 77.8 155 40.0
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 1.5e-12 77.4 176 38.1
AL1G65730 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 2.0e-12 77.0 334 29.3
Thhalv10023508m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 2.0e-12 77.0 96 50.0
Eucgr.H04515 Eucalyptus grandis HOM05D000520 ORTHO05D000399 4.5e-12 75.9 97 50.5
Sc16g0008600 Simmondsia chinensis HOM05D000520 ORTHO05D000399 4.5e-12 75.9 166 40.4
Aa31LG2G11670 Aethionema arabicum HOM05D000520 ORTHO05D000399 5.8e-12 75.5 362 27.3
Cc02_g33120 Coffea canephora HOM05D000520 ORTHO05D000399 5.8e-12 75.5 102 48.0
BcaC04g22039 Brassica carinata HOM05D000520 ORTHO05D000399 1.3e-11 74.3 369 29.8
C09p24200 Brassica napus HOM05D000520 ORTHO05D000399 1.3e-11 74.3 369 29.8
BolC9t55337H Brassica oleracea HOM05D000520 ORTHO05D000399 1.3e-11 74.3 369 29.8
AT1G56210 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 4.9e-11 72.4 96 50.0
Carub.0002s0803 Capsella rubella HOM05D000520 ORTHO05D000399 6.5e-11 72.0 358 28.5
SalBow7G2560 Salvia bowleyana HOM05D000520 ORTHO05D000399 1.1e-10 71.2 72 56.9
Dinv30800 Davidia involucrata HOM05D000520 ORTHO05D000399 1.4e-10 70.9 326 27.9
Rhsim05G0141100 Rhododendron simsii HOM05D000520 ORTHO05D000399 1.4e-10 70.9 124 42.7
Lalb_Chr21g0310601 Lupinus albus HOM05D000520 ORTHO05D000399 2.5e-10 70.1 324 29.6
Hund21707 Selenicereus undatus HOM05D000520 ORTHO05D000399 4.2e-10 69.3 99 49.5
Dinv40323 Davidia involucrata HOM05D000520 ORTHO05D000399 5.5e-10 68.9 330 26.7
Psat6g150440 Pisum sativum HOM05D000520 ORTHO05D000399 5.5e-10 68.9 109 49.5
Dinv29767 Davidia involucrata HOM05D000520 ORTHO05D000399 7.1e-10 68.6 322 28.3
Thhalv10004455m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 7.1e-10 68.6 110 52.7
Oeu030336.1 Olea europaea HOM05D000520 ORTHO05D000399 1.2e-09 67.8 123 40.7
Nn4g25875 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.6e-09 67.4 140 39.3
Lj5g0012045 Lotus japonicus HOM05D000520 ORTHO05D000399 2.7e-09 66.6 114 45.6
Nitab4.5_0010962g0010 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.5e-09 66.2 159 37.1
Ca_10127_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 4.6e-09 65.9 166 36.7
Migut.G00167 Erythranthe guttata HOM05D000520 ORTHO05D000399 6.0e-09 65.5 336 25.3
Phvul.006G090100 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.0e-09 65.5 154 39.6
CDE02G4349 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 7.9e-09 65.1 253 26.9
THA.LOC104821721 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 7.9e-09 65.1 296 28.0
TAR633G1595 Trochodendron aralioides HOM05D000520 ORTHO05D000399 7.9e-09 65.1 190 34.7
CiPaw.07G105600 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.0e-08 64.7 289 28.0
MSTRG.20422 Avicennia marina HOM05D000520 ORTHO05D000399 1.8e-08 63.9 112 43.8
VMungo0540G1224 Vigna mungo HOM05D000520 ORTHO05D000399 1.8e-08 63.9 98 49.0
CAN.G665.11 Capsicum annuum HOM05D000520 ORTHO05D000399 2.3e-08 63.5 97 44.3
CDE05G0773 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 2.3e-08 63.5 284 28.2
Medtr1g083310 Medicago truncatula HOM05D000520 ORTHO05D000399 3.0e-08 63.2 95 50.5
MBI18_g04688_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 3.9e-08 62.8 98 45.9
HanXRQChr03g0080771 Helianthus annuus HOM05D000520 ORTHO05D000399 5.1e-08 62.4 302 26.5
PSO210G6472 Papaver somniferum HOM05D000520 ORTHO05D000399 5.1e-08 62.4 349 25.8
QL06p008798 Quercus lobata HOM05D000520 ORTHO05D000399 5.1e-08 62.4 304 27.0
Glyma.03G236200 Glycine max HOM05D000520 ORTHO05D000399 6.7e-08 62.0 141 39.0
Lj6C675T3 Lonicera japonica HOM05D000520 ORTHO05D000399 8.7e-08 61.6 286 28.0
SalBow2G0691 Salvia bowleyana HOM05D000520 ORTHO05D000399 8.7e-08 61.6 313 26.5
Prupe.6G321400 Prunus persica HOM05D000520 ORTHO05D000399 1.1e-07 61.2 38 63.2
Peaxi162Scf00037g01024 Petunia axillaris HOM05D000520 ORTHO05D000399 1.5e-07 60.8 351 27.1
Migut.G00271 Erythranthe guttata HOM05D000520 ORTHO05D000399 1.9e-07 60.5 325 27.4
HanXRQChr13g0411351 Helianthus annuus HOM05D000520 ORTHO05D000399 2.5e-07 60.1 292 30.1
PGSC0003DMG400011344 Solanum tuberosum HOM05D000520 ORTHO05D000399 2.5e-07 60.1 317 27.8
Lalb_Chr13g0303641 Lupinus albus HOM05D000520 ORTHO05D000399 4.3e-07 59.3 292 26.4
MD04G1201300 Malus domestica HOM05D000520 ORTHO05D000399 5.7e-07 58.9 108 39.8
RcHm_v2.0_Chr6g0293381 Rosa chinensis HOM05D000520 ORTHO05D000399 7.4e-07 58.5 55 52.7
Aqoxy5G00713 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 9.6e-07 58.2 345 28.1
CANSAT25G1223 Cannabis sativa HOM05D000520 ORTHO05D000399 9.6e-07 58.2 49 55.1
CANSAT25G1513 Cannabis sativa HOM05D000520 ORTHO05D000399 9.6e-07 58.2 49 55.1
Lj6g0005585 Lotus japonicus HOM05D000520 ORTHO05D000399 9.6e-07 58.2 289 26.3
Lalb_Chr07g0177721 Lupinus albus HOM05D000520 ORTHO05D000399 9.6e-07 58.2 295 26.4
MBI19_g29233_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 1.3e-06 57.8 36 66.7
MD12G1213700 Malus domestica HOM05D000520 ORTHO05D000399 1.3e-06 57.8 62 50.0
GSVIVG01027966001 Vitis vinifera HOM05D000520 ORTHO05D000399 1.3e-06 57.8 55 52.7
Actinidia40258 Actinidia chinensis HOM05D000520 ORTHO05D000399 1.6e-06 57.4 101 42.6
EL10Ac7g17484 Beta vulgaris HOM05D000520 ORTHO05D038263 1.6e-06 57.4 46 52.2
Lsat_1_v5_gn_9_87041 Lactuca sativa HOM05D000520 ORTHO05D000399 1.6e-06 57.4 74 51.4
Lj9A142G3 Lonicera japonica HOM05D000520 ORTHO05D000399 1.6e-06 57.4 238 31.5
VMungo0720G1715 Vigna mungo HOM05D000520 ORTHO05D000399 1.6e-06 57.4 156 35.9
SalBow3G2984 Salvia bowleyana HOM05D000520 ORTHO05D000399 2.1e-06 57.0 47 55.3
Solyc01g066880.3 Solanum lycopersicum HOM05D000520 ORTHO05D000399 2.1e-06 57.0 38 65.8
Sopen01g028480 Solanum pennellii HOM05D000520 ORTHO05D000399 2.1e-06 57.0 38 65.8
FvH4_3g05420 Fragaria vesca HOM05D000520 ORTHO05D000399 2.8e-06 56.6 55 50.9
GSVIVG01031153001 Vitis vinifera HOM05D000520 ORTHO05D000399 2.8e-06 56.6 38 65.8
Aqoxy3G00937 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 3.7e-06 56.2 35 68.6
FvH4_2g25240 Fragaria vesca HOM05D000520 ORTHO05D000399 3.7e-06 56.2 39 64.1
FAN20G2780 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.7e-06 56.2 39 64.1
FAN27G0616 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.7e-06 56.2 39 64.1
Rhsim04G0221200 Rhododendron simsii HOM05D000520 ORTHO05D000399 3.7e-06 56.2 89 41.6
Atru.chr5.1202 Acer truncatum HOM05D000520 ORTHO05D000399 4.8e-06 55.8 297 29.0
Aa31LG11G9430 Aethionema arabicum HOM05D000520 ORTHO05D000399 4.8e-06 55.8 328 27.1
MSTRG.21620 Avicennia marina HOM05D000520 ORTHO05D000399 4.8e-06 55.8 97 37.1
CANSAT78G2123 Cannabis sativa HOM05D000520 ORTHO05D000399 4.8e-06 55.8 35 68.6
Glyma.15G147400 Glycine max HOM05D000520 ORTHO05D000399 6.3e-06 55.5 275 26.9
Sp2g20850 Schrenkiella parvula HOM05D000520 ORTHO05D000399 6.3e-06 55.5 35 65.7
Actinidia21058 Actinidia chinensis HOM05D000520 ORTHO05D000399 8.2e-06 55.1 46 54.3
Actinidia24329 Actinidia chinensis HOM05D000520 ORTHO05D000399 8.2e-06 55.1 30 73.3
BolC2t11889H Brassica oleracea HOM05D000520 ORTHO05D000399 8.2e-06 55.1 114 47.4
PSO832G3103 Papaver somniferum HOM05D000520 ORTHO05D000399 8.2e-06 55.1 96 43.8
Prupe.8G257200 Prunus persica HOM05D000520 ORTHO05D000399 8.2e-06 55.1 51 51.0
QL12p026987 Quercus lobata HOM05D000520 ORTHO05D000399 8.2e-06 55.1 52 50.0
SGA_v2.0_scaffold67G22639 Striga asiatica HOM05D000520 ORTHO05D000399 8.2e-06 55.1 38 57.9
TPR.G3180 Trifolium pratense HOM05D000520 ORTHO05D000399 8.2e-06 55.1 30 76.7


User provided reference genes

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