Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 4.5e-70 267.7 126 100.0
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.9e-28 129.4 64 93.8
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 5.6e-28 127.9 64 92.2
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 5.3e-18 94.7 78 65.4
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 1.2e-17 93.6 77 64.9
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 9.9e-17 90.5 76 63.2
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 9.9e-17 90.5 87 52.9
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.3e-16 90.1 76 63.2
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 1.3e-16 90.1 76 63.2
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 4.2e-15 85.1 78 57.7
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 3.5e-14 82.0 78 55.1
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 4.6e-14 81.6 78 57.7
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 4.6e-14 81.6 78 57.7
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.3e-13 80.1 68 58.8
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 1.3e-13 80.1 78 55.1
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 3.9e-13 78.6 64 65.6
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 5.1e-13 78.2 64 62.5
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 6.6e-13 77.8 67 61.2
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 6.6e-13 77.8 71 59.2
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 8.7e-13 77.4 66 60.6
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 8.7e-13 77.4 64 59.4
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 8.7e-13 77.4 73 54.8
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.1e-12 77.0 78 51.3
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 1.1e-12 77.0 68 60.3
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.1e-12 77.0 77 55.8
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.5e-12 76.6 67 59.7
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.5e-12 76.6 76 60.5
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.9e-12 76.3 77 54.5
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.5e-12 75.9 78 53.8
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 2.5e-12 75.9 64 60.9
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 3.3e-12 75.5 78 50.0
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 3.3e-12 75.5 65 56.9
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 3.3e-12 75.5 67 62.7
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 3.3e-12 75.5 72 51.4
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 4.3e-12 75.1 64 60.9
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 4.3e-12 75.1 64 60.9
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 5.6e-12 74.7 78 52.6
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 7.4e-12 74.3 78 48.7
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 9.6e-12 73.9 78 51.3
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 9.6e-12 73.9 76 51.3
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.3e-11 73.6 78 48.7
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 1.3e-11 73.6 73 54.8
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 1.3e-11 73.6 64 59.4
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 1.3e-11 73.6 78 56.4
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 1.3e-11 73.6 75 53.3
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 1.6e-11 73.2 66 56.1
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 1.6e-11 73.2 74 52.7
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.6e-11 73.2 65 60.0
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.6e-11 73.2 68 55.9
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 2.1e-11 72.8 64 57.8
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 2.1e-11 72.8 64 57.8
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 2.1e-11 72.8 66 56.1
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.1e-11 72.8 78 50.0
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 2.1e-11 72.8 78 51.3
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 2.8e-11 72.4 69 56.5
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 2.8e-11 72.4 77 49.4
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.8e-11 72.4 76 51.3
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 2.8e-11 72.4 82 51.2
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 3.6e-11 72.0 67 62.7
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 3.6e-11 72.0 67 59.7
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 6.2e-11 71.2 68 54.4
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 8.1e-11 70.9 77 53.2
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 8.1e-11 70.9 77 53.2
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 8.1e-11 70.9 71 54.9
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 8.1e-11 70.9 78 47.4
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 8.1e-11 70.9 78 47.4
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 1.1e-10 70.5 78 48.7
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.1e-10 70.5 70 52.9
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.1e-10 70.5 75 52.0
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.4e-10 70.1 66 56.1
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 1.4e-10 70.1 77 53.2
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 1.8e-10 69.7 64 54.7
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 2.4e-10 69.3 64 56.2
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 3.1e-10 68.9 79 48.1
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 4.0e-10 68.6 78 48.7
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.0e-10 68.6 63 55.6
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 5.3e-10 68.2 63 57.1
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 5.3e-10 68.2 66 53.0
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 6.9e-10 67.8 64 56.2
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 9.0e-10 67.4 77 50.6
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 9.0e-10 67.4 76 48.7
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 1.5e-09 66.6 66 57.6
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 1.5e-09 66.6 72 47.2
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 2.0e-09 66.2 77 51.9
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 2.6e-09 65.9 65 60.0
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 2.6e-09 65.9 73 50.7
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 2.6e-09 65.9 64 56.2
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 5.8e-09 64.7 69 50.7
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 5.8e-09 64.7 77 46.8
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.6e-09 64.3 74 48.6
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 7.6e-09 64.3 73 50.7
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 2.9e-08 62.4 79 45.6
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 5.5e-07 58.2 65 46.2
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 6.0e-06 54.7 65 43.1


User provided reference genes

Program Settings